Results 1 - 20 of 74 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30757 | 3' | -55.9 | NC_006552.1 | + | 8420 | 0.66 | 0.692082 |
Target: 5'- gGGCu-CAGGCC-GCGCC-AGGcGCGCa -3' miRNA: 3'- -UCGucGUCCGGuCGCGGcUUUaUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 61358 | 0.66 | 0.701782 |
Target: 5'- cGCAGCaacgucgggagccGGGCCAuguuuuggcGCGCCGGcg-GCGg -3' miRNA: 3'- uCGUCG-------------UCCGGU---------CGCGGCUuuaUGCg -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 41152 | 0.66 | 0.724187 |
Target: 5'- cGCAGCGcuGGUCGcCGuuGAAcaGCGCa -3' miRNA: 3'- uCGUCGU--CCGGUcGCggCUUuaUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 27371 | 0.66 | 0.713561 |
Target: 5'- gAGcCGGCAGaCCAGCagGCCGAAcuGUuuGCg -3' miRNA: 3'- -UC-GUCGUCcGGUCG--CGGCUU--UAugCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 25213 | 0.66 | 0.713561 |
Target: 5'- uGGuCAGCA-GCgCGGCGCCGuug-ACGUu -3' miRNA: 3'- -UC-GUCGUcCG-GUCGCGGCuuuaUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 26193 | 0.66 | 0.670374 |
Target: 5'- cGcCAGUAGGCCAGgugcuUGCCGGucggcAUGgGCg -3' miRNA: 3'- uC-GUCGUCCGGUC-----GCGGCUu----UAUgCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 38368 | 0.66 | 0.692082 |
Target: 5'- cAGCAGCAGuucgcccaCCAGgGuCCGGccgGCGCg -3' miRNA: 3'- -UCGUCGUCc-------GGUCgC-GGCUuuaUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 21913 | 0.66 | 0.692082 |
Target: 5'- -cCAGCAGcGCCuGCacgGCCu-GAUGCGCg -3' miRNA: 3'- ucGUCGUC-CGGuCG---CGGcuUUAUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 16808 | 0.66 | 0.723129 |
Target: 5'- cAGguGCcaacgcuGGaGCCAGCGCCcGA---ACGCc -3' miRNA: 3'- -UCguCG-------UC-CGGUCGCGG-CUuuaUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 11332 | 0.66 | 0.670374 |
Target: 5'- cGGCGGCGucgauGGCUuccucggugacGGCgGCCGAGGUugGg -3' miRNA: 3'- -UCGUCGU-----CCGG-----------UCG-CGGCUUUAugCg -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 35422 | 0.66 | 0.670374 |
Target: 5'- uGGCAGCcuGGGCCGcagccuucGCGUCu---UGCGCg -3' miRNA: 3'- -UCGUCG--UCCGGU--------CGCGGcuuuAUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 17704 | 0.66 | 0.702856 |
Target: 5'- ---uGUAGaGCCGcGCGCUGAuuUGCGCc -3' miRNA: 3'- ucguCGUC-CGGU-CGCGGCUuuAUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 30088 | 0.66 | 0.724187 |
Target: 5'- gGGUAGCAGGCUGGCcaGCCuGGuccACGa -3' miRNA: 3'- -UCGUCGUCCGGUCG--CGG-CUuuaUGCg -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 3573 | 0.66 | 0.692082 |
Target: 5'- cAGguGCuGGCCgAGcCGCCG----GCGCc -3' miRNA: 3'- -UCguCGuCCGG-UC-GCGGCuuuaUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 62960 | 0.66 | 0.723129 |
Target: 5'- cGC-GCAcgaacuGGCCGGCGCCGuucuucugccggcGGAccUGCGCc -3' miRNA: 3'- uCGuCGU------CCGGUCGCGGC-------------UUU--AUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 43171 | 0.67 | 0.626612 |
Target: 5'- gAGCuuucGGUAGGCCAgGUGCUGGucGUAgGCc -3' miRNA: 3'- -UCG----UCGUCCGGU-CGCGGCUu-UAUgCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 2052 | 0.67 | 0.626612 |
Target: 5'- aGGCgcuugAGCGcGCCGGCGUCG---UGCGCg -3' miRNA: 3'- -UCG-----UCGUcCGGUCGCGGCuuuAUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 47647 | 0.67 | 0.626612 |
Target: 5'- cGGCAGCAaagcguGGCCGGCuGUCGGGAUcucAgGUc -3' miRNA: 3'- -UCGUCGU------CCGGUCG-CGGCUUUA---UgCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 5066 | 0.67 | 0.625517 |
Target: 5'- uGGCcacCAGGCCAGCcagcgcuaucgcaGCCaGAAcgGCGCc -3' miRNA: 3'- -UCGuc-GUCCGGUCG-------------CGG-CUUuaUGCG- -5' |
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30757 | 3' | -55.9 | NC_006552.1 | + | 36379 | 0.67 | 0.641953 |
Target: 5'- cAGCAauGCGGauuacuccgcgucucGCCGGCGCuCGGAG-ACGCc -3' miRNA: 3'- -UCGU--CGUC---------------CGGUCGCG-GCUUUaUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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