miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30757 3' -55.9 NC_006552.1 + 62960 0.66 0.723129
Target:  5'- cGC-GCAcgaacuGGCCGGCGCCGuucuucugccggcGGAccUGCGCc -3'
miRNA:   3'- uCGuCGU------CCGGUCGCGGC-------------UUU--AUGCG- -5'
30757 3' -55.9 NC_006552.1 + 61989 0.68 0.572079
Target:  5'- uGCAGCA-GCgAG-GCCGAAcucUGCGCg -3'
miRNA:   3'- uCGUCGUcCGgUCgCGGCUUu--AUGCG- -5'
30757 3' -55.9 NC_006552.1 + 61358 0.66 0.701782
Target:  5'- cGCAGCaacgucgggagccGGGCCAuguuuuggcGCGCCGGcg-GCGg -3'
miRNA:   3'- uCGUCG-------------UCCGGU---------CGCGGCUuuaUGCg -5'
30757 3' -55.9 NC_006552.1 + 60157 0.69 0.53881
Target:  5'- uGCGGCAgaucgccGGCCAGCacuuccGCCGGAuc-CGCc -3'
miRNA:   3'- uCGUCGU-------CCGGUCG------CGGCUUuauGCG- -5'
30757 3' -55.9 NC_006552.1 + 57466 0.68 0.572079
Target:  5'- uGCGGCGGaGgUGGCGCCGG--UACGg -3'
miRNA:   3'- uCGUCGUC-CgGUCGCGGCUuuAUGCg -5'
30757 3' -55.9 NC_006552.1 + 56858 0.71 0.418971
Target:  5'- cGGCAGCGccgcGGCgAGCGgCGA---ACGCa -3'
miRNA:   3'- -UCGUCGU----CCGgUCGCgGCUuuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 56263 0.74 0.265302
Target:  5'- uGGCAGCcaAGGCCGGCGuCCGccAGUuCGCc -3'
miRNA:   3'- -UCGUCG--UCCGGUCGC-GGCu-UUAuGCG- -5'
30757 3' -55.9 NC_006552.1 + 53797 0.7 0.447725
Target:  5'- uGGCAccgggucguGCucuuuGGCCGGCugGCCGAAAUcgcaGCGCa -3'
miRNA:   3'- -UCGU---------CGu----CCGGUCG--CGGCUUUA----UGCG- -5'
30757 3' -55.9 NC_006552.1 + 53764 0.68 0.572079
Target:  5'- aAGCAGaCcGGCCAGCaGCaGGA--GCGCa -3'
miRNA:   3'- -UCGUC-GuCCGGUCG-CGgCUUuaUGCG- -5'
30757 3' -55.9 NC_006552.1 + 52116 0.74 0.277673
Target:  5'- aGGCAGCAGaGcCCAGCGCUacccagugGCGCg -3'
miRNA:   3'- -UCGUCGUC-C-GGUCGCGGcuuua---UGCG- -5'
30757 3' -55.9 NC_006552.1 + 51876 0.86 0.044783
Target:  5'- cAGCGGCAGgaguuggaaGCCAGCaaGCCGAAAUGCGCc -3'
miRNA:   3'- -UCGUCGUC---------CGGUCG--CGGCUUUAUGCG- -5'
30757 3' -55.9 NC_006552.1 + 51705 0.69 0.518745
Target:  5'- cGCGGCAaGaCCAGCGaCGAGAUugcCGCg -3'
miRNA:   3'- uCGUCGUcC-GGUCGCgGCUUUAu--GCG- -5'
30757 3' -55.9 NC_006552.1 + 51526 0.68 0.582922
Target:  5'- --aGGCAGGCCAGaucaucgaCGCCGAGGcgaaGCg -3'
miRNA:   3'- ucgUCGUCCGGUC--------GCGGCUUUaug-CG- -5'
30757 3' -55.9 NC_006552.1 + 50111 0.67 0.604721
Target:  5'- cGCAGCAcGGCgGcGCGuuGAAAgcUACGg -3'
miRNA:   3'- uCGUCGU-CCGgU-CGCggCUUU--AUGCg -5'
30757 3' -55.9 NC_006552.1 + 48863 0.67 0.615659
Target:  5'- uGGCuagaaGGuCAGGCCA-CGCCGGugcugcUGCGCa -3'
miRNA:   3'- -UCG-----UC-GUCCGGUcGCGGCUuu----AUGCG- -5'
30757 3' -55.9 NC_006552.1 + 48657 0.7 0.438018
Target:  5'- cGGaAGCGauGGCCAuucaucGCGCCGAGAucUACGCc -3'
miRNA:   3'- -UCgUCGU--CCGGU------CGCGGCUUU--AUGCG- -5'
30757 3' -55.9 NC_006552.1 + 47942 0.74 0.252084
Target:  5'- gAGCuGCAGGCCcGCGCCugcaagguGAAAgcCGCa -3'
miRNA:   3'- -UCGuCGUCCGGuCGCGG--------CUUUauGCG- -5'
30757 3' -55.9 NC_006552.1 + 47647 0.67 0.626612
Target:  5'- cGGCAGCAaagcguGGCCGGCuGUCGGGAUcucAgGUc -3'
miRNA:   3'- -UCGUCGU------CCGGUCG-CGGCUUUA---UgCG- -5'
30757 3' -55.9 NC_006552.1 + 45378 0.72 0.358997
Target:  5'- uGGCAGCGcGGCCcgggcucuugcucGGCGCCGAcgaauuccccgcccgGGgccgGCGCa -3'
miRNA:   3'- -UCGUCGU-CCGG-------------UCGCGGCU---------------UUa---UGCG- -5'
30757 3' -55.9 NC_006552.1 + 44456 0.77 0.165019
Target:  5'- gAGCAGCAacugcgcuGCCGGCGCCGGcagACGCc -3'
miRNA:   3'- -UCGUCGUc-------CGGUCGCGGCUuuaUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.