miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30759 3' -55.5 NC_006552.1 + 65020 0.73 0.376264
Target:  5'- gGGCG-CAaguuugGCCGCGCCACUc-GCUGGg -3'
miRNA:   3'- -UCGCaGUa-----UGGCGCGGUGGcuUGACC- -5'
30759 3' -55.5 NC_006552.1 + 64753 0.7 0.518422
Target:  5'- uGGCGcucaacaUCGUccaaCGCGCCACCGAcgccCUGGg -3'
miRNA:   3'- -UCGC-------AGUAug--GCGCGGUGGCUu---GACC- -5'
30759 3' -55.5 NC_006552.1 + 62754 0.77 0.225073
Target:  5'- gGGCGggCGcUGCCGCGCCugCGAGCgacgccUGGa -3'
miRNA:   3'- -UCGCa-GU-AUGGCGCGGugGCUUG------ACC- -5'
30759 3' -55.5 NC_006552.1 + 62558 0.67 0.732172
Target:  5'- cGGCGUCAg--CGCGa---CGAACUGGa -3'
miRNA:   3'- -UCGCAGUaugGCGCggugGCUUGACC- -5'
30759 3' -55.5 NC_006552.1 + 62450 0.66 0.782479
Target:  5'- cGGCGUUccggcgccGCUGCGCCucACCGAG-UGGa -3'
miRNA:   3'- -UCGCAGua------UGGCGCGG--UGGCUUgACC- -5'
30759 3' -55.5 NC_006552.1 + 60266 0.76 0.262169
Target:  5'- cGCGggcuuUCccGCCGCGCCACCcGGCUGGc -3'
miRNA:   3'- uCGC-----AGuaUGGCGCGGUGGcUUGACC- -5'
30759 3' -55.5 NC_006552.1 + 59408 0.66 0.742469
Target:  5'- cAGCGUCAggcggugGCgGCGUgaaCGCgGAACUGu -3'
miRNA:   3'- -UCGCAGUa------UGgCGCG---GUGgCUUGACc -5'
30759 3' -55.5 NC_006552.1 + 59347 0.74 0.342811
Target:  5'- cAGCGUCA-GCC-CGCCGCCGA--UGGc -3'
miRNA:   3'- -UCGCAGUaUGGcGCGGUGGCUugACC- -5'
30759 3' -55.5 NC_006552.1 + 58613 0.75 0.282513
Target:  5'- gGGCGUCGgugGCCGCGCCgggcagacugaACCGcGACcGGg -3'
miRNA:   3'- -UCGCAGUa--UGGCGCGG-----------UGGC-UUGaCC- -5'
30759 3' -55.5 NC_006552.1 + 56909 0.78 0.192528
Target:  5'- aGGaGUgGUACCGCGCCcgcGCUGGACUGGc -3'
miRNA:   3'- -UCgCAgUAUGGCGCGG---UGGCUUGACC- -5'
30759 3' -55.5 NC_006552.1 + 55177 0.7 0.509169
Target:  5'- cGUGcucCAUGCgCGCGaCGCUGAGCUGGg -3'
miRNA:   3'- uCGCa--GUAUG-GCGCgGUGGCUUGACC- -5'
30759 3' -55.5 NC_006552.1 + 52151 0.72 0.410024
Target:  5'- cGCGUCGUugauaaaACCGCGCUcaucgccgccaucGCCGAAggcCUGGc -3'
miRNA:   3'- uCGCAGUA-------UGGCGCGG-------------UGGCUU---GACC- -5'
30759 3' -55.5 NC_006552.1 + 51115 0.7 0.540263
Target:  5'- cGCGaUC--GCCGCGgCACCGAACUc- -3'
miRNA:   3'- uCGC-AGuaUGGCGCgGUGGCUUGAcc -5'
30759 3' -55.5 NC_006552.1 + 40229 0.67 0.721779
Target:  5'- cAGCGUCAUGCggcagaaagUGCGUU-CCGAACaGGu -3'
miRNA:   3'- -UCGCAGUAUG---------GCGCGGuGGCUUGaCC- -5'
30759 3' -55.5 NC_006552.1 + 38773 0.71 0.468944
Target:  5'- cGCGuacuUCAUGCCGCGCacguaGCCGua-UGGa -3'
miRNA:   3'- uCGC----AGUAUGGCGCGg----UGGCuugACC- -5'
30759 3' -55.5 NC_006552.1 + 38676 0.69 0.613792
Target:  5'- gGGCGUCAgucauggcUACCGCGCCcuugguacgcucgACgCGAGCg-- -3'
miRNA:   3'- -UCGCAGU--------AUGGCGCGG-------------UG-GCUUGacc -5'
30759 3' -55.5 NC_006552.1 + 35916 0.67 0.721779
Target:  5'- aGGCGUUGUagcuuGCCuGCGCgGCCuGGGCUuGGg -3'
miRNA:   3'- -UCGCAGUA-----UGG-CGCGgUGG-CUUGA-CC- -5'
30759 3' -55.5 NC_006552.1 + 35286 0.69 0.571971
Target:  5'- gGGC-UCAUGCCGCGCagggcguCCGAcaUGGa -3'
miRNA:   3'- -UCGcAGUAUGGCGCGgu-----GGCUugACC- -5'
30759 3' -55.5 NC_006552.1 + 34432 0.66 0.752659
Target:  5'- aAGCuGUUGUACUGgGCCGgCGAGCa-- -3'
miRNA:   3'- -UCG-CAGUAUGGCgCGGUgGCUUGacc -5'
30759 3' -55.5 NC_006552.1 + 33834 0.75 0.268144
Target:  5'- cGGCGUgAaACCGCcgaacugGCCGCCGAGCgGGa -3'
miRNA:   3'- -UCGCAgUaUGGCG-------CGGUGGCUUGaCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.