Results 21 - 32 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30759 | 3' | -55.5 | NC_006552.1 | + | 32467 | 1.1 | 0.001122 |
Target: 5'- cAGCGUCAUACCGCGCCACCGAACUGGu -3' miRNA: 3'- -UCGCAGUAUGGCGCGGUGGCUUGACC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 26549 | 0.66 | 0.772675 |
Target: 5'- cAGCGUCAggcgcucgGCCugcGCGCCAUCGuAGgUGa -3' miRNA: 3'- -UCGCAGUa-------UGG---CGCGGUGGC-UUgACc -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 26340 | 0.67 | 0.732172 |
Target: 5'- cGCGUCAgguagagGCGCgCGCCGGucacACUGGc -3' miRNA: 3'- uCGCAGUaugg---CGCG-GUGGCU----UGACC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 21641 | 0.69 | 0.561344 |
Target: 5'- cGCGaUUcUGCCG-GCCACCG-GCUGGc -3' miRNA: 3'- uCGC-AGuAUGGCgCGGUGGCuUGACC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 15556 | 0.69 | 0.593357 |
Target: 5'- uGGCGUCGgggcuugcUGCUGCGCCGCC----UGGu -3' miRNA: 3'- -UCGCAGU--------AUGGCGCGGUGGcuugACC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 15256 | 0.69 | 0.61487 |
Target: 5'- aGGCGUCGUcuGCCGU-CCGCU--GCUGGu -3' miRNA: 3'- -UCGCAGUA--UGGCGcGGUGGcuUGACC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 13403 | 0.72 | 0.43041 |
Target: 5'- cGC-UCAUGCCGCGCuCACgGAACa-- -3' miRNA: 3'- uCGcAGUAUGGCGCG-GUGgCUUGacc -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 7234 | 0.67 | 0.700746 |
Target: 5'- cGCGg---GCCuGCGCCAUC-AACUGGu -3' miRNA: 3'- uCGCaguaUGG-CGCGGUGGcUUGACC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 5298 | 0.8 | 0.147425 |
Target: 5'- cGGCGcaUCGagcUACCGCGCCaguuggugauGCCGAACUGGc -3' miRNA: 3'- -UCGC--AGU---AUGGCGCGG----------UGGCUUGACC- -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 4774 | 0.69 | 0.571971 |
Target: 5'- uGCGUCAccUGCgGCGCCACC--ACUa- -3' miRNA: 3'- uCGCAGU--AUGgCGCGGUGGcuUGAcc -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 2180 | 0.68 | 0.657995 |
Target: 5'- cGCGauagccCAUACCGCGCCGCUucGCUu- -3' miRNA: 3'- uCGCa-----GUAUGGCGCGGUGGcuUGAcc -5' |
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30759 | 3' | -55.5 | NC_006552.1 | + | 1021 | 0.66 | 0.782479 |
Target: 5'- cGCGccUCGUcACgGCGCUGCCGGGCa-- -3' miRNA: 3'- uCGC--AGUA-UGgCGCGGUGGCUUGacc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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