miRNA display CGI


Results 1 - 8 of 8 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30759 5' -60.3 NC_006552.1 + 28225 0.66 0.53831
Target:  5'- uCGCGaccucCGGCGUCACGuuguGGAuGCGCGg -3'
miRNA:   3'- -GCGCaccu-GCCGUAGUGC----CCU-CGCGC- -5'
30759 5' -60.3 NC_006552.1 + 5661 0.66 0.53831
Target:  5'- aCGCccccGGAUGGCcUCgauGCGGGcAGCGCu -3'
miRNA:   3'- -GCGca--CCUGCCGuAG---UGCCC-UCGCGc -5'
30759 5' -60.3 NC_006552.1 + 22518 0.68 0.396517
Target:  5'- --aGUGGugGGCcgCcuugugauCGGcGAGCGCGg -3'
miRNA:   3'- gcgCACCugCCGuaGu-------GCC-CUCGCGC- -5'
30759 5' -60.3 NC_006552.1 + 50097 0.68 0.42299
Target:  5'- aCGCGggcGGaACGcGCAgCACGGcGGCGCGu -3'
miRNA:   3'- -GCGCa--CC-UGC-CGUaGUGCCcUCGCGC- -5'
30759 5' -60.3 NC_006552.1 + 25307 0.69 0.33136
Target:  5'- gGUGUcGGuCGGCGUCcaagcuggGCGGGuAGCGCu -3'
miRNA:   3'- gCGCA-CCuGCCGUAG--------UGCCC-UCGCGc -5'
30759 5' -60.3 NC_006552.1 + 1915 0.72 0.24299
Target:  5'- aCGaCGUGcucgacGGCGGCGUCGuuguCGGGAGUGUGg -3'
miRNA:   3'- -GC-GCAC------CUGCCGUAGU----GCCCUCGCGC- -5'
30759 5' -60.3 NC_006552.1 + 52959 0.72 0.24299
Target:  5'- cCGCc-GGuGCGGCAUC-CGGGuGCGCGu -3'
miRNA:   3'- -GCGcaCC-UGCCGUAGuGCCCuCGCGC- -5'
30759 5' -60.3 NC_006552.1 + 32501 1.07 0.000608
Target:  5'- gCGCGUGGACGGCAUCACGGGAGCGCGc -3'
miRNA:   3'- -GCGCACCUGCCGUAGUGCCCUCGCGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.