miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30763 5' -59.1 NC_006552.1 + 11320 0.66 0.596484
Target:  5'- cUCCCugGauguCGGCGGCGuCGAUGgcuuCCu -3'
miRNA:   3'- -GGGGugCc---GCCGCCGC-GUUACaac-GG- -5'
30763 5' -59.1 NC_006552.1 + 32350 0.66 0.586019
Target:  5'- gCgCACGGCGGCuucGCGCAcugcGUcGUUgaGCCa -3'
miRNA:   3'- gGgGUGCCGCCGc--CGCGU----UA-CAA--CGG- -5'
30763 5' -59.1 NC_006552.1 + 34573 0.66 0.586019
Target:  5'- uCCagCACGuCGGCGGUGgUGAUGUUGUa -3'
miRNA:   3'- -GGg-GUGCcGCCGCCGC-GUUACAACGg -5'
30763 5' -59.1 NC_006552.1 + 39771 0.66 0.586019
Target:  5'- gUCCACGGuCaGCGGCGUgucgcccgcaGGUGgcaaGCCg -3'
miRNA:   3'- gGGGUGCC-GcCGCCGCG----------UUACaa--CGG- -5'
30763 5' -59.1 NC_006552.1 + 10745 0.66 0.572468
Target:  5'- gCCCAUGGCGaugcgcugcugcGCGGUGCucagggcaugcagauUGgcGCCg -3'
miRNA:   3'- gGGGUGCCGC------------CGCCGCGuu-------------ACaaCGG- -5'
30763 5' -59.1 NC_006552.1 + 47701 0.67 0.542533
Target:  5'- gCCCAgcCGGaGGUGGCGCGuaacgccgGCCa -3'
miRNA:   3'- gGGGU--GCCgCCGCCGCGUuacaa---CGG- -5'
30763 5' -59.1 NC_006552.1 + 55413 0.67 0.534363
Target:  5'- uCUCCAcCGGCGGCuaCGUAcUGUUcGCCc -3'
miRNA:   3'- -GGGGU-GCCGCCGccGCGUuACAA-CGG- -5'
30763 5' -59.1 NC_006552.1 + 31400 0.67 0.524213
Target:  5'- aCCguCGGCGGCGcCGcCAGUGgugGUCu -3'
miRNA:   3'- gGGguGCCGCCGCcGC-GUUACaa-CGG- -5'
30763 5' -59.1 NC_006552.1 + 22015 0.67 0.524213
Target:  5'- gCUgACGGUGGCGGCGUccucgaccagGAcacUGgcgGCCu -3'
miRNA:   3'- gGGgUGCCGCCGCCGCG----------UU---ACaa-CGG- -5'
30763 5' -59.1 NC_006552.1 + 26520 0.67 0.524213
Target:  5'- gCCaCCAgCaGCGGCGGCGCcggGGUGU--CCa -3'
miRNA:   3'- -GG-GGU-GcCGCCGCCGCG---UUACAacGG- -5'
30763 5' -59.1 NC_006552.1 + 26711 0.67 0.514138
Target:  5'- gCCCAgGGCgccgaaGGCGucgccGUGCAGUGggcuUUGCCa -3'
miRNA:   3'- gGGGUgCCG------CCGC-----CGCGUUAC----AACGG- -5'
30763 5' -59.1 NC_006552.1 + 33748 0.68 0.474683
Target:  5'- gCCagCGCGGCGGCGGCauugcuguugaGCAGaacgccgGCCg -3'
miRNA:   3'- -GGg-GUGCCGCCGCCG-----------CGUUacaa---CGG- -5'
30763 5' -59.1 NC_006552.1 + 19435 0.68 0.474683
Target:  5'- aCCCUACGG-GG-GGCGuCAGUaGUUGUa -3'
miRNA:   3'- -GGGGUGCCgCCgCCGC-GUUA-CAACGg -5'
30763 5' -59.1 NC_006552.1 + 5015 0.68 0.474683
Target:  5'- aCUUCAgguUGGCGGUGGCGUccUGguacaggUGCCg -3'
miRNA:   3'- -GGGGU---GCCGCCGCCGCGuuACa------ACGG- -5'
30763 5' -59.1 NC_006552.1 + 56863 0.68 0.474683
Target:  5'- gCgCCGCGGCGaGCGGCgaacGCAGggGUU-CCg -3'
miRNA:   3'- -GgGGUGCCGC-CGCCG----CGUUa-CAAcGG- -5'
30763 5' -59.1 NC_006552.1 + 21138 0.68 0.45553
Target:  5'- gCCCagguugacggGCGGCGGCgacgcgauaGGCGCAuccg-GCCg -3'
miRNA:   3'- gGGG----------UGCCGCCG---------CCGCGUuacaaCGG- -5'
30763 5' -59.1 NC_006552.1 + 60136 0.68 0.45553
Target:  5'- aCCCAUGGUGGCGG-GagaaAGUGcgGCa -3'
miRNA:   3'- gGGGUGCCGCCGCCgCg---UUACaaCGg -5'
30763 5' -59.1 NC_006552.1 + 4802 0.69 0.391998
Target:  5'- cCCCCACcuGCGGCgGGgGCGAUGc-GCa -3'
miRNA:   3'- -GGGGUGc-CGCCG-CCgCGUUACaaCGg -5'
30763 5' -59.1 NC_006552.1 + 41124 0.7 0.374933
Target:  5'- -gCCGCGucGCGGUccuGCGCGAUGaUGCCg -3'
miRNA:   3'- ggGGUGC--CGCCGc--CGCGUUACaACGG- -5'
30763 5' -59.1 NC_006552.1 + 60828 0.7 0.358379
Target:  5'- cCCCUACGGCGaGCccGGCGaucgGUUGUg -3'
miRNA:   3'- -GGGGUGCCGC-CG--CCGCguuaCAACGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.