miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30772 3' -54.8 NC_006552.1 + 25305 0.66 0.798594
Target:  5'- gCGGuGUCGGuCGgCGUCCaAGcuGGGCGGg -3'
miRNA:   3'- -GCC-UAGUC-GCgGUAGG-UCuuUCCGCU- -5'
30772 3' -54.8 NC_006552.1 + 35697 0.66 0.798594
Target:  5'- uGGAUCGGUGCCAguuUCUGGuccacGAGuGCGc -3'
miRNA:   3'- gCCUAGUCGCGGU---AGGUCu----UUC-CGCu -5'
30772 3' -54.8 NC_006552.1 + 9922 0.66 0.779064
Target:  5'- uCGG-UCAGCGCCuugCCGGucuuuuGCGAa -3'
miRNA:   3'- -GCCuAGUCGCGGua-GGUCuuuc--CGCU- -5'
30772 3' -54.8 NC_006552.1 + 35526 0.66 0.769068
Target:  5'- uCGGccgCGGUGCCGucuUCCAGcaccuuGGCGAu -3'
miRNA:   3'- -GCCua-GUCGCGGU---AGGUCuuu---CCGCU- -5'
30772 3' -54.8 NC_006552.1 + 53596 0.66 0.758933
Target:  5'- cCGGccaguUCGGUGCCG-CCGGcuGAGGUGGa -3'
miRNA:   3'- -GCCu----AGUCGCGGUaGGUCu-UUCCGCU- -5'
30772 3' -54.8 NC_006552.1 + 32024 0.66 0.758933
Target:  5'- uCGGc-CAGCGCCAUgUCAGccAGGGGCGu -3'
miRNA:   3'- -GCCuaGUCGCGGUA-GGUC--UUUCCGCu -5'
30772 3' -54.8 NC_006552.1 + 20875 0.69 0.597724
Target:  5'- uCGGAUCuguuccAGCGCUuccauGUCCGGcauGGCGAu -3'
miRNA:   3'- -GCCUAG------UCGCGG-----UAGGUCuuuCCGCU- -5'
30772 3' -54.8 NC_006552.1 + 48694 0.7 0.55446
Target:  5'- cCGGGUUGGCGCCGUCCGGccc-GCc- -3'
miRNA:   3'- -GCCUAGUCGCGGUAGGUCuuucCGcu -5'
30772 3' -54.8 NC_006552.1 + 60689 0.72 0.413217
Target:  5'- -uGGUCcGCGCCAUCCuGGAAGGUa- -3'
miRNA:   3'- gcCUAGuCGCGGUAGGuCUUUCCGcu -5'
30772 3' -54.8 NC_006552.1 + 9827 0.73 0.385005
Target:  5'- cCGGGUCcagauucGGC-CCAaCCAGAAAGGUGAg -3'
miRNA:   3'- -GCCUAG-------UCGcGGUaGGUCUUUCCGCU- -5'
30772 3' -54.8 NC_006552.1 + 26008 1.09 0.001349
Target:  5'- cCGGAUCAGCGCCAUCCAGAAAGGCGAc -3'
miRNA:   3'- -GCCUAGUCGCGGUAGGUCUUUCCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.