miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30772 5' -57.2 NC_006552.1 + 26043 1.14 0.000344
Target:  5'- aCCUGGCCCACCCAAAUGCCGCCAUCCa -3'
miRNA:   3'- -GGACCGGGUGGGUUUACGGCGGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 14160 0.79 0.126084
Target:  5'- cCCgGGacauCCACCCAGGUGUCGCCuUCCu -3'
miRNA:   3'- -GGaCCg---GGUGGGUUUACGGCGGuAGG- -5'
30772 5' -57.2 NC_006552.1 + 54008 0.78 0.140513
Target:  5'- cCCUGGCCCugGCCgCGA--GCCGCCA-CCg -3'
miRNA:   3'- -GGACCGGG--UGG-GUUuaCGGCGGUaGG- -5'
30772 5' -57.2 NC_006552.1 + 63024 0.77 0.165003
Target:  5'- -aUGG-CCGCCCAGcgcaaccugGCCGCCAUCCu -3'
miRNA:   3'- ggACCgGGUGGGUUua-------CGGCGGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 39526 0.76 0.183398
Target:  5'- uCCUGG-CCGCCCAc--GUCGCCGUUCg -3'
miRNA:   3'- -GGACCgGGUGGGUuuaCGGCGGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 1627 0.75 0.208382
Target:  5'- uCC-GGCCCACCCGAcUGCCGgagauucCCAugUCCu -3'
miRNA:   3'- -GGaCCGGGUGGGUUuACGGC-------GGU--AGG- -5'
30772 5' -57.2 NC_006552.1 + 39191 0.74 0.237452
Target:  5'- gCUGGcCCCACCau-GUGCUGCCGUa- -3'
miRNA:   3'- gGACC-GGGUGGguuUACGGCGGUAgg -5'
30772 5' -57.2 NC_006552.1 + 22577 0.74 0.243535
Target:  5'- uCCUGGCCCGuCUCGuaGAUGCUGgCGUaCCg -3'
miRNA:   3'- -GGACCGGGU-GGGU--UUACGGCgGUA-GG- -5'
30772 5' -57.2 NC_006552.1 + 36273 0.73 0.275913
Target:  5'- uCCUGGCagCCugUuCAGGUGUCGgCCGUCCg -3'
miRNA:   3'- -GGACCG--GGugG-GUUUACGGC-GGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 16372 0.73 0.275913
Target:  5'- gCCgccGGCCCGCCCAua----GCCAUCCc -3'
miRNA:   3'- -GGa--CCGGGUGGGUuuacggCGGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 26283 0.73 0.282787
Target:  5'- aCCgUGGCCgCGCCCAGcggGUaGUCGCCggCCa -3'
miRNA:   3'- -GG-ACCGG-GUGGGUU---UA-CGGCGGuaGG- -5'
30772 5' -57.2 NC_006552.1 + 61688 0.73 0.289797
Target:  5'- aCCUGG-CCGCUCGAccacGCCGgCAUCCu -3'
miRNA:   3'- -GGACCgGGUGGGUUua--CGGCgGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 27713 0.72 0.326884
Target:  5'- gCUUGGCCUGCUCGGGUGCCuCCuucaCCg -3'
miRNA:   3'- -GGACCGGGUGGGUUUACGGcGGua--GG- -5'
30772 5' -57.2 NC_006552.1 + 34165 0.72 0.342675
Target:  5'- gCCUGG-CCGCCCAGcagcagGgCGCgGUCCa -3'
miRNA:   3'- -GGACCgGGUGGGUUua----CgGCGgUAGG- -5'
30772 5' -57.2 NC_006552.1 + 21787 0.71 0.359008
Target:  5'- --cGGUCCAagCCug--GCCGCCGUCCu -3'
miRNA:   3'- ggaCCGGGUg-GGuuuaCGGCGGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 18300 0.71 0.379314
Target:  5'- aCCUGGCCuCGCCCGGGcgcagcacuggaacuUGgCGCCG-CUg -3'
miRNA:   3'- -GGACCGG-GUGGGUUU---------------ACgGCGGUaGG- -5'
30772 5' -57.2 NC_006552.1 + 27841 0.71 0.392392
Target:  5'- gCUGGCaggccguagccguCCACCUuGAUGCCGgCGUCg -3'
miRNA:   3'- gGACCG-------------GGUGGGuUUACGGCgGUAGg -5'
30772 5' -57.2 NC_006552.1 + 49424 0.7 0.402166
Target:  5'- gCCUGGCUCGCcgcugaacuCCAAAUcacGCCGCCcgaaugCCa -3'
miRNA:   3'- -GGACCGGGUG---------GGUUUA---CGGCGGua----GG- -5'
30772 5' -57.2 NC_006552.1 + 45216 0.7 0.417572
Target:  5'- gCCUGGCCCACacgaucgaucagcuUCGAAagcuUGCCGgCAaCCg -3'
miRNA:   3'- -GGACCGGGUG--------------GGUUU----ACGGCgGUaGG- -5'
30772 5' -57.2 NC_006552.1 + 25399 0.7 0.429593
Target:  5'- --cGGUCCAgUuagcagCAGGUGCUGCCGUCCc -3'
miRNA:   3'- ggaCCGGGUgG------GUUUACGGCGGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.