miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30772 5' -57.2 NC_006552.1 + 969 0.66 0.63399
Target:  5'- uCC-GGUCCGCUC-GAUGCUGCCc-CCg -3'
miRNA:   3'- -GGaCCGGGUGGGuUUACGGCGGuaGG- -5'
30772 5' -57.2 NC_006552.1 + 1627 0.75 0.208382
Target:  5'- uCC-GGCCCACCCGAcUGCCGgagauucCCAugUCCu -3'
miRNA:   3'- -GGaCCGGGUGGGUUuACGGC-------GGU--AGG- -5'
30772 5' -57.2 NC_006552.1 + 4497 0.7 0.448477
Target:  5'- --aGGCgCACCgAGcgGCUGCCAgCCa -3'
miRNA:   3'- ggaCCGgGUGGgUUuaCGGCGGUaGG- -5'
30772 5' -57.2 NC_006552.1 + 6196 0.68 0.538545
Target:  5'- cCCUGGUCUuuCUCGaaGAUGCCgGCCGcCCa -3'
miRNA:   3'- -GGACCGGGu-GGGU--UUACGG-CGGUaGG- -5'
30772 5' -57.2 NC_006552.1 + 9379 0.68 0.544793
Target:  5'- gCCUGGCCacugccgcgcacguCGCCCcGugcggcgcgcuucAUGCCaGCCAUCg -3'
miRNA:   3'- -GGACCGG--------------GUGGGuU-------------UACGG-CGGUAGg -5'
30772 5' -57.2 NC_006552.1 + 9466 0.67 0.601886
Target:  5'- cCCaGGCCCAuCCCAug-GgCGagCAUCCa -3'
miRNA:   3'- -GGaCCGGGU-GGGUuuaCgGCg-GUAGG- -5'
30772 5' -57.2 NC_006552.1 + 11592 0.68 0.517906
Target:  5'- cCCagGGCCUGCaCCAGuucGCCGCCGaacucgCCa -3'
miRNA:   3'- -GGa-CCGGGUG-GGUUua-CGGCGGUa-----GG- -5'
30772 5' -57.2 NC_006552.1 + 12669 0.67 0.623278
Target:  5'- cCUUGGCCUGCUCAcgcagggccuuGGUGCUcucaGCC-UCCa -3'
miRNA:   3'- -GGACCGGGUGGGU-----------UUACGG----CGGuAGG- -5'
30772 5' -57.2 NC_006552.1 + 13635 0.66 0.666078
Target:  5'- aCgGGCCUGCUCGgcggccuggcGAucUGCCGCCuuuUCCu -3'
miRNA:   3'- gGaCCGGGUGGGU----------UU--ACGGCGGu--AGG- -5'
30772 5' -57.2 NC_006552.1 + 14160 0.79 0.126084
Target:  5'- cCCgGGacauCCACCCAGGUGUCGCCuUCCu -3'
miRNA:   3'- -GGaCCg---GGUGGGUUUACGGCGGuAGG- -5'
30772 5' -57.2 NC_006552.1 + 14520 0.66 0.655399
Target:  5'- aCCUcuucGCCgUugUCGcggGCCGCCAUCCa -3'
miRNA:   3'- -GGAc---CGG-GugGGUuuaCGGCGGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 14868 0.67 0.601886
Target:  5'- --aGGCUCG-CCAGGUGCUGCCGgaUCg -3'
miRNA:   3'- ggaCCGGGUgGGUUUACGGCGGU--AGg -5'
30772 5' -57.2 NC_006552.1 + 16372 0.73 0.275913
Target:  5'- gCCgccGGCCCGCCCAua----GCCAUCCc -3'
miRNA:   3'- -GGa--CCGGGUGGGUuuacggCGGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 17756 0.68 0.517906
Target:  5'- --aGGCCgugucguuauuCGCCCGAGUGCuCGCCAg-- -3'
miRNA:   3'- ggaCCGG-----------GUGGGUUUACG-GCGGUagg -5'
30772 5' -57.2 NC_006552.1 + 18300 0.71 0.379314
Target:  5'- aCCUGGCCuCGCCCGGGcgcagcacuggaacuUGgCGCCG-CUg -3'
miRNA:   3'- -GGACCGG-GUGGGUUU---------------ACgGCGGUaGG- -5'
30772 5' -57.2 NC_006552.1 + 19188 0.68 0.570001
Target:  5'- cCCcGaGCCC-CCCAAGUGCuuccuCGCCGaucgcuUCCg -3'
miRNA:   3'- -GGaC-CGGGuGGGUUUACG-----GCGGU------AGG- -5'
30772 5' -57.2 NC_006552.1 + 21168 0.66 0.687335
Target:  5'- --aGGCgCAUCCGgccgcgucGGUGCCGgCaCAUCCg -3'
miRNA:   3'- ggaCCGgGUGGGU--------UUACGGC-G-GUAGG- -5'
30772 5' -57.2 NC_006552.1 + 21787 0.71 0.359008
Target:  5'- --cGGUCCAagCCug--GCCGCCGUCCu -3'
miRNA:   3'- ggaCCGGGUg-GGuuuaCGGCGGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 21875 0.67 0.601886
Target:  5'- -aUGGUCCAgcaCCAgcgcggcaaugGAUGCC-CCGUCCa -3'
miRNA:   3'- ggACCGGGUg--GGU-----------UUACGGcGGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 22052 0.67 0.591222
Target:  5'- gCCUGGCCagugCugUCGcuGAUGCgCGCggCAUCCa -3'
miRNA:   3'- -GGACCGG----GugGGU--UUACG-GCG--GUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.