miRNA display CGI


Results 21 - 40 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30772 5' -57.2 NC_006552.1 + 22577 0.74 0.243535
Target:  5'- uCCUGGCCCGuCUCGuaGAUGCUGgCGUaCCg -3'
miRNA:   3'- -GGACCGGGU-GGGU--UUACGGCgGUA-GG- -5'
30772 5' -57.2 NC_006552.1 + 22858 0.66 0.687335
Target:  5'- --cGGCCCACa--GAUGCCcGUgaCAUCCa -3'
miRNA:   3'- ggaCCGGGUGgguUUACGG-CG--GUAGG- -5'
30772 5' -57.2 NC_006552.1 + 23237 0.67 0.591222
Target:  5'- aCCUGGaCCgGCUCAc--GCCGCCGa-- -3'
miRNA:   3'- -GGACC-GGgUGGGUuuaCGGCGGUagg -5'
30772 5' -57.2 NC_006552.1 + 24522 0.68 0.538545
Target:  5'- uCCaGGCgcugaCGCCCAua-GCCGCCGaCCa -3'
miRNA:   3'- -GGaCCGg----GUGGGUuuaCGGCGGUaGG- -5'
30772 5' -57.2 NC_006552.1 + 25399 0.7 0.429593
Target:  5'- --cGGUCCAgUuagcagCAGGUGCUGCCGUCCc -3'
miRNA:   3'- ggaCCGGGUgG------GUUUACGGCGGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 26043 1.14 0.000344
Target:  5'- aCCUGGCCCACCCAAAUGCCGCCAUCCa -3'
miRNA:   3'- -GGACCGGGUGGGUUUACGGCGGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 26283 0.73 0.282787
Target:  5'- aCCgUGGCCgCGCCCAGcggGUaGUCGCCggCCa -3'
miRNA:   3'- -GG-ACCGG-GUGGGUU---UA-CGGCGGuaGG- -5'
30772 5' -57.2 NC_006552.1 + 26565 0.66 0.687335
Target:  5'- gCCUGcGCgCCAUCguaggugaAGAUGcCCGCCGuUCCg -3'
miRNA:   3'- -GGAC-CG-GGUGGg-------UUUAC-GGCGGU-AGG- -5'
30772 5' -57.2 NC_006552.1 + 26997 0.67 0.623278
Target:  5'- aCCUGGCCgCACauugg-GCaCGCCcacAUCCa -3'
miRNA:   3'- -GGACCGG-GUGgguuuaCG-GCGG---UAGG- -5'
30772 5' -57.2 NC_006552.1 + 27713 0.72 0.326884
Target:  5'- gCUUGGCCUGCUCGGGUGCCuCCuucaCCg -3'
miRNA:   3'- -GGACCGGGUGGGUUUACGGcGGua--GG- -5'
30772 5' -57.2 NC_006552.1 + 27841 0.71 0.392392
Target:  5'- gCUGGCaggccguagccguCCACCUuGAUGCCGgCGUCg -3'
miRNA:   3'- gGACCG-------------GGUGGGuUUACGGCgGUAGg -5'
30772 5' -57.2 NC_006552.1 + 28042 0.68 0.548971
Target:  5'- uCUUGGUcaCCACCagcuUGUCGCCcAUCCu -3'
miRNA:   3'- -GGACCG--GGUGGguuuACGGCGG-UAGG- -5'
30772 5' -57.2 NC_006552.1 + 28125 0.67 0.612574
Target:  5'- gCCUGGCCgAacaaCUgcAUGUuacUGCCGUCCg -3'
miRNA:   3'- -GGACCGGgUg---GGuuUACG---GCGGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 29053 0.69 0.466834
Target:  5'- gCCUGG-CgGCuCCAAgaagcgcGUGCCGCCGaCCa -3'
miRNA:   3'- -GGACCgGgUG-GGUU-------UACGGCGGUaGG- -5'
30772 5' -57.2 NC_006552.1 + 29801 0.66 0.655399
Target:  5'- --aGGUUCGCCgGcggGCCGCCAcCCa -3'
miRNA:   3'- ggaCCGGGUGGgUuuaCGGCGGUaGG- -5'
30772 5' -57.2 NC_006552.1 + 32396 0.67 0.616854
Target:  5'- uCCUGGUCCGaCCAGAaauacggcuccaccaUGUCGUucgCGUCCg -3'
miRNA:   3'- -GGACCGGGUgGGUUU---------------ACGGCG---GUAGG- -5'
30772 5' -57.2 NC_006552.1 + 34165 0.72 0.342675
Target:  5'- gCCUGG-CCGCCCAGcagcagGgCGCgGUCCa -3'
miRNA:   3'- -GGACCgGGUGGGUUua----CgGCGgUAGG- -5'
30772 5' -57.2 NC_006552.1 + 36273 0.73 0.275913
Target:  5'- uCCUGGCagCCugUuCAGGUGUCGgCCGUCCg -3'
miRNA:   3'- -GGACCG--GGugG-GUUUACGGC-GGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 39119 0.66 0.663945
Target:  5'- uCCaGGCCCGCgCCucguuccaugcauuGugcaguccgguggacGUGCCGCCuUCCa -3'
miRNA:   3'- -GGaCCGGGUG-GGu-------------U---------------UACGGCGGuAGG- -5'
30772 5' -57.2 NC_006552.1 + 39191 0.74 0.237452
Target:  5'- gCUGGcCCCACCau-GUGCUGCCGUa- -3'
miRNA:   3'- gGACC-GGGUGGguuUACGGCGGUAgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.