Results 21 - 40 of 60 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30772 | 5' | -57.2 | NC_006552.1 | + | 32396 | 0.67 | 0.616854 |
Target: 5'- uCCUGGUCCGaCCAGAaauacggcuccaccaUGUCGUucgCGUCCg -3' miRNA: 3'- -GGACCGGGUgGGUUU---------------ACGGCG---GUAGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 12669 | 0.67 | 0.623278 |
Target: 5'- cCUUGGCCUGCUCAcgcagggccuuGGUGCUcucaGCC-UCCa -3' miRNA: 3'- -GGACCGGGUGGGU-----------UUACGG----CGGuAGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 26997 | 0.67 | 0.623278 |
Target: 5'- aCCUGGCCgCACauugg-GCaCGCCcacAUCCa -3' miRNA: 3'- -GGACCGG-GUGgguuuaCG-GCGG---UAGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 43260 | 0.67 | 0.623278 |
Target: 5'- gCUGGCUCACgC---UGCCGCCc-CCu -3' miRNA: 3'- gGACCGGGUGgGuuuACGGCGGuaGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 9379 | 0.68 | 0.544793 |
Target: 5'- gCCUGGCCacugccgcgcacguCGCCCcGugcggcgcgcuucAUGCCaGCCAUCg -3' miRNA: 3'- -GGACCGG--------------GUGGGuU-------------UACGG-CGGUAGg -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 28042 | 0.68 | 0.548971 |
Target: 5'- uCUUGGUcaCCACCagcuUGUCGCCcAUCCu -3' miRNA: 3'- -GGACCG--GGUGGguuuACGGCGG-UAGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 53189 | 0.68 | 0.548971 |
Target: 5'- gCUGGgaaaUCACCCccgAAAUGaCCGCgAUCCa -3' miRNA: 3'- gGACCg---GGUGGG---UUUAC-GGCGgUAGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 52194 | 0.68 | 0.570001 |
Target: 5'- gCCUGGCCa--CCGAGgacuUGCuCGUCGUCg -3' miRNA: 3'- -GGACCGGgugGGUUU----ACG-GCGGUAGg -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 24522 | 0.68 | 0.538545 |
Target: 5'- uCCaGGCgcugaCGCCCAua-GCCGCCGaCCa -3' miRNA: 3'- -GGaCCGg----GUGGGUuuaCGGCGGUaGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 6196 | 0.68 | 0.538545 |
Target: 5'- cCCUGGUCUuuCUCGaaGAUGCCgGCCGcCCa -3' miRNA: 3'- -GGACCGGGu-GGGU--UUACGG-CGGUaGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 41309 | 0.68 | 0.528188 |
Target: 5'- gCUGucGCCUuCCUcGAUGCUGCCGUCa -3' miRNA: 3'- gGAC--CGGGuGGGuUUACGGCGGUAGg -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 11592 | 0.68 | 0.517906 |
Target: 5'- cCCagGGCCUGCaCCAGuucGCCGCCGaacucgCCa -3' miRNA: 3'- -GGa-CCGGGUG-GGUUua-CGGCGGUa-----GG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 17756 | 0.68 | 0.517906 |
Target: 5'- --aGGCCgugucguuauuCGCCCGAGUGCuCGCCAg-- -3' miRNA: 3'- ggaCCGG-----------GUGGGUUUACG-GCGGUagg -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 19188 | 0.68 | 0.570001 |
Target: 5'- cCCcGaGCCC-CCCAAGUGCuuccuCGCCGaucgcuUCCg -3' miRNA: 3'- -GGaC-CGGGuGGGUUUACG-----GCGGU------AGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 29053 | 0.69 | 0.466834 |
Target: 5'- gCCUGG-CgGCuCCAAgaagcgcGUGCCGCCGaCCa -3' miRNA: 3'- -GGACCgGgUG-GGUU-------UACGGCGGUaGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 51177 | 0.69 | 0.49759 |
Target: 5'- --aGGCCCGCgCCAAAgcGCCaGUCGUCa -3' miRNA: 3'- ggaCCGGGUG-GGUUUa-CGG-CGGUAGg -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 61637 | 0.69 | 0.467811 |
Target: 5'- aUCUGGa-UGCCCGAG-GCCGCCggCCg -3' miRNA: 3'- -GGACCggGUGGGUUUaCGGCGGuaGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 53590 | 0.7 | 0.448477 |
Target: 5'- -gUGGCgCCGgCCAGuucgGUGCCGCCggCUg -3' miRNA: 3'- ggACCG-GGUgGGUU----UACGGCGGuaGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 4497 | 0.7 | 0.448477 |
Target: 5'- --aGGCgCACCgAGcgGCUGCCAgCCa -3' miRNA: 3'- ggaCCGgGUGGgUUuaCGGCGGUaGG- -5' |
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30772 | 5' | -57.2 | NC_006552.1 | + | 63058 | 0.7 | 0.447522 |
Target: 5'- aCCU-GUUCGCCCAGGUGCugggcauggccaaCGCCGUCg -3' miRNA: 3'- -GGAcCGGGUGGGUUUACG-------------GCGGUAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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