miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30772 5' -57.2 NC_006552.1 + 63058 0.7 0.447522
Target:  5'- aCCU-GUUCGCCCAGGUGCugggcauggccaaCGCCGUCg -3'
miRNA:   3'- -GGAcCGGGUGGGUUUACG-------------GCGGUAGg -5'
30772 5' -57.2 NC_006552.1 + 63024 0.77 0.165003
Target:  5'- -aUGG-CCGCCCAGcgcaaccugGCCGCCAUCCu -3'
miRNA:   3'- ggACCgGGUGGGUUua-------CGGCGGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 62047 0.66 0.676727
Target:  5'- gCUGGaCCUgcuACCCGGAgacUGCCGgguucgaCAUCCu -3'
miRNA:   3'- gGACC-GGG---UGGGUUU---ACGGCg------GUAGG- -5'
30772 5' -57.2 NC_006552.1 + 61688 0.73 0.289797
Target:  5'- aCCUGG-CCGCUCGAccacGCCGgCAUCCu -3'
miRNA:   3'- -GGACCgGGUGGGUUua--CGGCgGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 61637 0.69 0.467811
Target:  5'- aUCUGGa-UGCCCGAG-GCCGCCggCCg -3'
miRNA:   3'- -GGACCggGUGGGUUUaCGGCGGuaGG- -5'
30772 5' -57.2 NC_006552.1 + 61050 0.67 0.600818
Target:  5'- --cGGCCgagCAUCCAuAUGCCGCguugggccucccgCAUCCu -3'
miRNA:   3'- ggaCCGG---GUGGGUuUACGGCG-------------GUAGG- -5'
30772 5' -57.2 NC_006552.1 + 59738 0.66 0.65433
Target:  5'- uCCUGGCCCgcugcuacgaacuGCUCGAGUacggcgGCCG-CAUCg -3'
miRNA:   3'- -GGACCGGG-------------UGGGUUUA------CGGCgGUAGg -5'
30772 5' -57.2 NC_006552.1 + 54008 0.78 0.140513
Target:  5'- cCCUGGCCCugGCCgCGA--GCCGCCA-CCg -3'
miRNA:   3'- -GGACCGGG--UGG-GUUuaCGGCGGUaGG- -5'
30772 5' -57.2 NC_006552.1 + 53590 0.7 0.448477
Target:  5'- -gUGGCgCCGgCCAGuucgGUGCCGCCggCUg -3'
miRNA:   3'- ggACCG-GGUgGGUU----UACGGCGGuaGG- -5'
30772 5' -57.2 NC_006552.1 + 53189 0.68 0.548971
Target:  5'- gCUGGgaaaUCACCCccgAAAUGaCCGCgAUCCa -3'
miRNA:   3'- gGACCg---GGUGGG---UUUAC-GGCGgUAGG- -5'
30772 5' -57.2 NC_006552.1 + 52942 0.66 0.63399
Target:  5'- gCCUGcGCCggCGCCCGccgccGGUGCgG-CAUCCg -3'
miRNA:   3'- -GGAC-CGG--GUGGGU-----UUACGgCgGUAGG- -5'
30772 5' -57.2 NC_006552.1 + 52194 0.68 0.570001
Target:  5'- gCCUGGCCa--CCGAGgacuUGCuCGUCGUCg -3'
miRNA:   3'- -GGACCGGgugGGUUU----ACG-GCGGUAGg -5'
30772 5' -57.2 NC_006552.1 + 52141 0.67 0.594418
Target:  5'- -gUGGCgCGCCCGcgucguuGAUaaaaccgcgcucaucGCCGCCAUCg -3'
miRNA:   3'- ggACCGgGUGGGU-------UUA---------------CGGCGGUAGg -5'
30772 5' -57.2 NC_006552.1 + 51177 0.69 0.49759
Target:  5'- --aGGCCCGCgCCAAAgcGCCaGUCGUCa -3'
miRNA:   3'- ggaCCGGGUG-GGUUUa-CGG-CGGUAGg -5'
30772 5' -57.2 NC_006552.1 + 49424 0.7 0.402166
Target:  5'- gCCUGGCUCGCcgcugaacuCCAAAUcacGCCGCCcgaaugCCa -3'
miRNA:   3'- -GGACCGGGUG---------GGUUUA---CGGCGGua----GG- -5'
30772 5' -57.2 NC_006552.1 + 45216 0.7 0.417572
Target:  5'- gCCUGGCCCACacgaucgaucagcuUCGAAagcuUGCCGgCAaCCg -3'
miRNA:   3'- -GGACCGGGUG--------------GGUUU----ACGGCgGUaGG- -5'
30772 5' -57.2 NC_006552.1 + 43260 0.67 0.623278
Target:  5'- gCUGGCUCACgC---UGCCGCCc-CCu -3'
miRNA:   3'- gGACCGGGUGgGuuuACGGCGGuaGG- -5'
30772 5' -57.2 NC_006552.1 + 41309 0.68 0.528188
Target:  5'- gCUGucGCCUuCCUcGAUGCUGCCGUCa -3'
miRNA:   3'- gGAC--CGGGuGGGuUUACGGCGGUAGg -5'
30772 5' -57.2 NC_006552.1 + 40618 0.66 0.6447
Target:  5'- -aUGcGCUCGCCCA--UGUCGCgCAUCa -3'
miRNA:   3'- ggAC-CGGGUGGGUuuACGGCG-GUAGg -5'
30772 5' -57.2 NC_006552.1 + 39526 0.76 0.183398
Target:  5'- uCCUGG-CCGCCCAc--GUCGCCGUUCg -3'
miRNA:   3'- -GGACCgGGUGGGUuuaCGGCGGUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.