Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 5673 | 0.66 | 0.6554 |
Target: 5'- gGCCucgauGCGGGCAGcGCucucgGCugAUUCGcGGCGg -3' miRNA: 3'- -CGG-----UGCCUGUC-CG-----UGugUGAGU-CCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 43386 | 0.66 | 0.6554 |
Target: 5'- aCCAUccaGGGCAucauGGCACGCACUgCAuGCGa -3' miRNA: 3'- cGGUG---CCUGU----CCGUGUGUGA-GUcCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 27416 | 0.66 | 0.6554 |
Target: 5'- gGCCACGGucuacgGCAGGCACcccgaguaACAUcgaaUCAgcaccGGCGa -3' miRNA: 3'- -CGGUGCC------UGUCCGUG--------UGUG----AGU-----CCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 50094 | 0.66 | 0.644701 |
Target: 5'- cGCaCGCGGGCGGaacGCGCAgCACggCGGcGCGu -3' miRNA: 3'- -CG-GUGCCUGUC---CGUGU-GUGa-GUC-CGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 24935 | 0.66 | 0.644701 |
Target: 5'- aCCGCuGGGCAGaucccaACGCGCUuCAGGCu -3' miRNA: 3'- cGGUG-CCUGUCcg----UGUGUGA-GUCCGc -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 13169 | 0.66 | 0.64363 |
Target: 5'- cGUCGCGGGCGuucuGCGUACGCUCGaaugccuGGCGg -3' miRNA: 3'- -CGGUGCCUGUc---CGUGUGUGAGU-------CCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 25940 | 0.66 | 0.63399 |
Target: 5'- cGgCAgGGACAGGacuGCACuAC-CAGGCa -3' miRNA: 3'- -CgGUgCCUGUCCg--UGUG-UGaGUCCGc -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 1028 | 0.66 | 0.63399 |
Target: 5'- cGUCACGGcgcugcCGGGCAU-CACgCAGGCu -3' miRNA: 3'- -CGGUGCCu-----GUCCGUGuGUGaGUCCGc -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 44577 | 0.66 | 0.623279 |
Target: 5'- uGCCugGcacGAguGaGCAgGCGCUCguAGGCGg -3' miRNA: 3'- -CGGugC---CUguC-CGUgUGUGAG--UCCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 19732 | 0.66 | 0.612574 |
Target: 5'- gGCCACGuuGGCGcuGGCcgcuGCGCGC-CAGGCu -3' miRNA: 3'- -CGGUGC--CUGU--CCG----UGUGUGaGUCCGc -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 8251 | 0.66 | 0.612574 |
Target: 5'- gGCCAUGGugucCAGGC-UACGgUCGguGGCGg -3' miRNA: 3'- -CGGUGCCu---GUCCGuGUGUgAGU--CCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 50283 | 0.67 | 0.601886 |
Target: 5'- aGCCAaaUGcGACuGGCGCcCGC-CGGGCGc -3' miRNA: 3'- -CGGU--GC-CUGuCCGUGuGUGaGUCCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 2658 | 0.67 | 0.570001 |
Target: 5'- gGCUAgGGACcgcgcGGCGCcgaucaACGCUCGGGuCGa -3' miRNA: 3'- -CGGUgCCUGu----CCGUG------UGUGAGUCC-GC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 60888 | 0.68 | 0.538546 |
Target: 5'- uGCgGCGcACcGGCGCugGCauaUCGGGCGg -3' miRNA: 3'- -CGgUGCcUGuCCGUGugUG---AGUCCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 24324 | 0.68 | 0.532323 |
Target: 5'- aGCCAUGGGCuguuacuugagucgaAGGC-CACAC-CAuGGCa -3' miRNA: 3'- -CGGUGCCUG---------------UCCGuGUGUGaGU-CCGc -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 41377 | 0.68 | 0.517907 |
Target: 5'- gGCagcCGGAaaaCAGGCGC-CACUCAGGg- -3' miRNA: 3'- -CGgu-GCCU---GUCCGUGuGUGAGUCCgc -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 62989 | 0.68 | 0.517907 |
Target: 5'- uGCCgGCGGACcuGCGC-CGC-CAGGUGu -3' miRNA: 3'- -CGG-UGCCUGucCGUGuGUGaGUCCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 8427 | 0.68 | 0.496583 |
Target: 5'- gGCCGCGc-CAGGCGCGCAgcaguccCUCGGGa- -3' miRNA: 3'- -CGGUGCcuGUCCGUGUGU-------GAGUCCgc -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 27048 | 0.68 | 0.487566 |
Target: 5'- uGCCACGGACuGGGCAUuuggaccCGgUgGGGUGa -3' miRNA: 3'- -CGGUGCCUG-UCCGUGu------GUgAgUCCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 28160 | 0.69 | 0.467812 |
Target: 5'- cGCCAcCGGacgccauuGCAGGCGCACGa--AGGCc -3' miRNA: 3'- -CGGU-GCC--------UGUCCGUGUGUgagUCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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