miRNA display CGI


Results 21 - 38 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30781 5' -57.6 NC_006552.1 + 27416 0.66 0.6554
Target:  5'- gGCCACGGucuacgGCAGGCACcccgaguaACAUcgaaUCAgcaccGGCGa -3'
miRNA:   3'- -CGGUGCC------UGUCCGUG--------UGUG----AGU-----CCGC- -5'
30781 5' -57.6 NC_006552.1 + 28160 0.69 0.467812
Target:  5'- cGCCAcCGGacgccauuGCAGGCGCACGa--AGGCc -3'
miRNA:   3'- -CGGU-GCC--------UGUCCGUGUGUgagUCCGc -5'
30781 5' -57.6 NC_006552.1 + 32080 0.69 0.448477
Target:  5'- aGCC-CGGucGgGGGUugGCAC-CAGGCGc -3'
miRNA:   3'- -CGGuGCC--UgUCCGugUGUGaGUCCGC- -5'
30781 5' -57.6 NC_006552.1 + 36952 0.82 0.063005
Target:  5'- aGUCAguCGGcuCAGGCGCACGCUCAGGUGg -3'
miRNA:   3'- -CGGU--GCCu-GUCCGUGUGUGAGUCCGC- -5'
30781 5' -57.6 NC_006552.1 + 41377 0.68 0.517907
Target:  5'- gGCagcCGGAaaaCAGGCGC-CACUCAGGg- -3'
miRNA:   3'- -CGgu-GCCU---GUCCGUGuGUGAGUCCgc -5'
30781 5' -57.6 NC_006552.1 + 43386 0.66 0.6554
Target:  5'- aCCAUccaGGGCAucauGGCACGCACUgCAuGCGa -3'
miRNA:   3'- cGGUG---CCUGU----CCGUGUGUGA-GUcCGC- -5'
30781 5' -57.6 NC_006552.1 + 44577 0.66 0.623279
Target:  5'- uGCCugGcacGAguGaGCAgGCGCUCguAGGCGg -3'
miRNA:   3'- -CGGugC---CUguC-CGUgUGUGAG--UCCGC- -5'
30781 5' -57.6 NC_006552.1 + 45861 0.73 0.275913
Target:  5'- cCUGCGGGCgucugaaccAGGCGCGCccaACUCGGGCa -3'
miRNA:   3'- cGGUGCCUG---------UCCGUGUG---UGAGUCCGc -5'
30781 5' -57.6 NC_006552.1 + 50094 0.66 0.644701
Target:  5'- cGCaCGCGGGCGGaacGCGCAgCACggCGGcGCGu -3'
miRNA:   3'- -CG-GUGCCUGUC---CGUGU-GUGa-GUC-CGC- -5'
30781 5' -57.6 NC_006552.1 + 50283 0.67 0.601886
Target:  5'- aGCCAaaUGcGACuGGCGCcCGC-CGGGCGc -3'
miRNA:   3'- -CGGU--GC-CUGuCCGUGuGUGaGUCCGC- -5'
30781 5' -57.6 NC_006552.1 + 50591 0.72 0.31164
Target:  5'- --gACGGACaccAGGUACACAaggCAGGCGa -3'
miRNA:   3'- cggUGCCUG---UCCGUGUGUga-GUCCGC- -5'
30781 5' -57.6 NC_006552.1 + 55810 0.71 0.342675
Target:  5'- cGCCAcCGcGCAGGCACGC-CUC-GGUGa -3'
miRNA:   3'- -CGGU-GCcUGUCCGUGUGuGAGuCCGC- -5'
30781 5' -57.6 NC_006552.1 + 59392 0.7 0.411185
Target:  5'- uCCAUGGA-GGGCGCGgcaGCgUCAGGCGg -3'
miRNA:   3'- cGGUGCCUgUCCGUGUg--UG-AGUCCGC- -5'
30781 5' -57.6 NC_006552.1 + 59474 0.72 0.319194
Target:  5'- aGCUGCuGGugAGGCGC-CACUUcGGCGc -3'
miRNA:   3'- -CGGUG-CCugUCCGUGuGUGAGuCCGC- -5'
30781 5' -57.6 NC_006552.1 + 60888 0.68 0.538546
Target:  5'- uGCgGCGcACcGGCGCugGCauaUCGGGCGg -3'
miRNA:   3'- -CGgUGCcUGuCCGUGugUG---AGUCCGC- -5'
30781 5' -57.6 NC_006552.1 + 61718 0.69 0.467812
Target:  5'- aCCGCGcGCGGGUACGCGCcCuGGCc -3'
miRNA:   3'- cGGUGCcUGUCCGUGUGUGaGuCCGc -5'
30781 5' -57.6 NC_006552.1 + 62989 0.68 0.517907
Target:  5'- uGCCgGCGGACcuGCGC-CGC-CAGGUGu -3'
miRNA:   3'- -CGG-UGCCUGucCGUGuGUGaGUCCGC- -5'
30781 5' -57.6 NC_006552.1 + 63786 0.71 0.342675
Target:  5'- cGCCGCGGACGccaucaccGGUGCGCuaGCUUcGGCGc -3'
miRNA:   3'- -CGGUGCCUGU--------CCGUGUG--UGAGuCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.