Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30781 | 5' | -57.6 | NC_006552.1 | + | 63786 | 0.71 | 0.342675 |
Target: 5'- cGCCGCGGACGccaucaccGGUGCGCuaGCUUcGGCGc -3' miRNA: 3'- -CGGUGCCUGU--------CCGUGUG--UGAGuCCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 62989 | 0.68 | 0.517907 |
Target: 5'- uGCCgGCGGACcuGCGC-CGC-CAGGUGu -3' miRNA: 3'- -CGG-UGCCUGucCGUGuGUGaGUCCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 61718 | 0.69 | 0.467812 |
Target: 5'- aCCGCGcGCGGGUACGCGCcCuGGCc -3' miRNA: 3'- cGGUGCcUGUCCGUGUGUGaGuCCGc -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 60888 | 0.68 | 0.538546 |
Target: 5'- uGCgGCGcACcGGCGCugGCauaUCGGGCGg -3' miRNA: 3'- -CGgUGCcUGuCCGUGugUG---AGUCCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 59474 | 0.72 | 0.319194 |
Target: 5'- aGCUGCuGGugAGGCGC-CACUUcGGCGc -3' miRNA: 3'- -CGGUG-CCugUCCGUGuGUGAGuCCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 59392 | 0.7 | 0.411185 |
Target: 5'- uCCAUGGA-GGGCGCGgcaGCgUCAGGCGg -3' miRNA: 3'- cGGUGCCUgUCCGUGUg--UG-AGUCCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 55810 | 0.71 | 0.342675 |
Target: 5'- cGCCAcCGcGCAGGCACGC-CUC-GGUGa -3' miRNA: 3'- -CGGU-GCcUGUCCGUGUGuGAGuCCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 50591 | 0.72 | 0.31164 |
Target: 5'- --gACGGACaccAGGUACACAaggCAGGCGa -3' miRNA: 3'- cggUGCCUG---UCCGUGUGUga-GUCCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 50283 | 0.67 | 0.601886 |
Target: 5'- aGCCAaaUGcGACuGGCGCcCGC-CGGGCGc -3' miRNA: 3'- -CGGU--GC-CUGuCCGUGuGUGaGUCCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 50094 | 0.66 | 0.644701 |
Target: 5'- cGCaCGCGGGCGGaacGCGCAgCACggCGGcGCGu -3' miRNA: 3'- -CG-GUGCCUGUC---CGUGU-GUGa-GUC-CGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 45861 | 0.73 | 0.275913 |
Target: 5'- cCUGCGGGCgucugaaccAGGCGCGCccaACUCGGGCa -3' miRNA: 3'- cGGUGCCUG---------UCCGUGUG---UGAGUCCGc -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 44577 | 0.66 | 0.623279 |
Target: 5'- uGCCugGcacGAguGaGCAgGCGCUCguAGGCGg -3' miRNA: 3'- -CGGugC---CUguC-CGUgUGUGAG--UCCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 43386 | 0.66 | 0.6554 |
Target: 5'- aCCAUccaGGGCAucauGGCACGCACUgCAuGCGa -3' miRNA: 3'- cGGUG---CCUGU----CCGUGUGUGA-GUcCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 41377 | 0.68 | 0.517907 |
Target: 5'- gGCagcCGGAaaaCAGGCGC-CACUCAGGg- -3' miRNA: 3'- -CGgu-GCCU---GUCCGUGuGUGAGUCCgc -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 36952 | 0.82 | 0.063005 |
Target: 5'- aGUCAguCGGcuCAGGCGCACGCUCAGGUGg -3' miRNA: 3'- -CGGU--GCCu-GUCCGUGUGUGAGUCCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 32080 | 0.69 | 0.448477 |
Target: 5'- aGCC-CGGucGgGGGUugGCAC-CAGGCGc -3' miRNA: 3'- -CGGuGCC--UgUCCGugUGUGaGUCCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 28160 | 0.69 | 0.467812 |
Target: 5'- cGCCAcCGGacgccauuGCAGGCGCACGa--AGGCc -3' miRNA: 3'- -CGGU-GCC--------UGUCCGUGUGUgagUCCGc -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 27416 | 0.66 | 0.6554 |
Target: 5'- gGCCACGGucuacgGCAGGCACcccgaguaACAUcgaaUCAgcaccGGCGa -3' miRNA: 3'- -CGGUGCC------UGUCCGUG--------UGUG----AGU-----CCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 27048 | 0.68 | 0.487566 |
Target: 5'- uGCCACGGACuGGGCAUuuggaccCGgUgGGGUGa -3' miRNA: 3'- -CGGUGCCUG-UCCGUGu------GUgAgUCCGC- -5' |
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30781 | 5' | -57.6 | NC_006552.1 | + | 25940 | 0.66 | 0.63399 |
Target: 5'- cGgCAgGGACAGGacuGCACuAC-CAGGCa -3' miRNA: 3'- -CgGUgCCUGUCCg--UGUG-UGaGUCCGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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