miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30782 5' -59.1 NC_006552.1 + 39540 0.65 0.626261
Target:  5'- gUCGCCGUUcGGCgucacccgccagucUGUGCGCGUGAcagCCu -3'
miRNA:   3'- -GGUGGCAGuCCG--------------GCGCGUGCGCUa--GG- -5'
30782 5' -59.1 NC_006552.1 + 18474 0.69 0.403531
Target:  5'- aCCGCCGcaAGcGCCccaCGCACGcCGGUCCc -3'
miRNA:   3'- -GGUGGCagUC-CGGc--GCGUGC-GCUAGG- -5'
30782 5' -59.1 NC_006552.1 + 5245 0.69 0.412339
Target:  5'- gCCACUucagCAGGUCGuCGCACGCcugCCg -3'
miRNA:   3'- -GGUGGca--GUCCGGC-GCGUGCGcuaGG- -5'
30782 5' -59.1 NC_006552.1 + 60234 0.69 0.412339
Target:  5'- aCACCGaacaguUCAuucgcaacgcGGCCGCGCGCGgGcuuUCCc -3'
miRNA:   3'- gGUGGC------AGU----------CCGGCGCGUGCgCu--AGG- -5'
30782 5' -59.1 NC_006552.1 + 38381 0.69 0.430306
Target:  5'- cCCACCaggGUCcGGCCG-GCGCGgaaguuguccaUGAUCCg -3'
miRNA:   3'- -GGUGG---CAGuCCGGCgCGUGC-----------GCUAGG- -5'
30782 5' -59.1 NC_006552.1 + 38752 0.69 0.448724
Target:  5'- aCCACUGuUCAGGCUGUccuGCGCGUacUUCa -3'
miRNA:   3'- -GGUGGC-AGUCCGGCG---CGUGCGcuAGG- -5'
30782 5' -59.1 NC_006552.1 + 55967 0.68 0.46757
Target:  5'- uCCGCCGcuUCAccGGCCGCGC-CGaaggccuguCGAUCa -3'
miRNA:   3'- -GGUGGC--AGU--CCGGCGCGuGC---------GCUAGg -5'
30782 5' -59.1 NC_006552.1 + 31398 0.68 0.476183
Target:  5'- gCACCGUC-GGCgGCGC-CGCcagugguGGUCUu -3'
miRNA:   3'- gGUGGCAGuCCGgCGCGuGCG-------CUAGG- -5'
30782 5' -59.1 NC_006552.1 + 31883 0.68 0.486815
Target:  5'- -aGCCGUgAaagcggcuucGGCCaGCGCGgCGCGGUUCg -3'
miRNA:   3'- ggUGGCAgU----------CCGG-CGCGU-GCGCUAGG- -5'
30782 5' -59.1 NC_006552.1 + 41115 0.7 0.394843
Target:  5'- aUCACC-UUA-GCCGCGU-CGCGGUCCu -3'
miRNA:   3'- -GGUGGcAGUcCGGCGCGuGCGCUAGG- -5'
30782 5' -59.1 NC_006552.1 + 9666 0.7 0.393981
Target:  5'- gCCugCaUCAaucauucGaGCCGC-CACGCGAUCCa -3'
miRNA:   3'- -GGugGcAGU-------C-CGGCGcGUGCGCUAGG- -5'
30782 5' -59.1 NC_006552.1 + 20296 0.7 0.386277
Target:  5'- gCCAgCGUCucgaAGGCCGCGUucuGCGCguugaacaggcuGAUCUg -3'
miRNA:   3'- -GGUgGCAG----UCCGGCGCG---UGCG------------CUAGG- -5'
30782 5' -59.1 NC_006552.1 + 14093 0.78 0.117505
Target:  5'- aCgGCCGgcCGGGCCGCGCuucaugucGCGCGcAUCCg -3'
miRNA:   3'- -GgUGGCa-GUCCGGCGCG--------UGCGC-UAGG- -5'
30782 5' -59.1 NC_006552.1 + 13683 0.74 0.202977
Target:  5'- aCgGgCGUcCAGuGCCgccugGCGCACGCGAUCCu -3'
miRNA:   3'- -GgUgGCA-GUC-CGG-----CGCGUGCGCUAGG- -5'
30782 5' -59.1 NC_006552.1 + 9147 0.73 0.235852
Target:  5'- gCCGCCGUCAcccugcgcguaGCCGCucgcggcaucCGCGCGAUCCg -3'
miRNA:   3'- -GGUGGCAGUc----------CGGCGc---------GUGCGCUAGG- -5'
30782 5' -59.1 NC_006552.1 + 22395 0.73 0.241747
Target:  5'- gCACCGUCucGCUGaUGCGCGCGGUgCu -3'
miRNA:   3'- gGUGGCAGucCGGC-GCGUGCGCUAgG- -5'
30782 5' -59.1 NC_006552.1 + 61024 0.73 0.253286
Target:  5'- aCGCCGaacuugaUCAGG-CGCGCugGCGG-CCg -3'
miRNA:   3'- gGUGGC-------AGUCCgGCGCGugCGCUaGG- -5'
30782 5' -59.1 NC_006552.1 + 26327 0.72 0.273078
Target:  5'- gCCACCauucgcucgcGUCAGGUagagGCGCGCGcCGGUCa -3'
miRNA:   3'- -GGUGG----------CAGUCCGg---CGCGUGC-GCUAGg -5'
30782 5' -59.1 NC_006552.1 + 8412 0.72 0.293396
Target:  5'- aCUGCuCGgggcUCAGGCCGCGCcagGCGCGcagcaGUCCc -3'
miRNA:   3'- -GGUG-GC----AGUCCGGCGCG---UGCGC-----UAGG- -5'
30782 5' -59.1 NC_006552.1 + 5421 0.7 0.377834
Target:  5'- uUCGCCaUCAGGCUGCGCGCcaGUuGUUCg -3'
miRNA:   3'- -GGUGGcAGUCCGGCGCGUG--CGcUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.