miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30782 5' -59.1 NC_006552.1 + 4931 0.67 0.567071
Target:  5'- gCCugUuUCAuGUCGCGCuGCGCGGUCa -3'
miRNA:   3'- -GGugGcAGUcCGGCGCG-UGCGCUAGg -5'
30782 5' -59.1 NC_006552.1 + 5245 0.69 0.412339
Target:  5'- gCCACUucagCAGGUCGuCGCACGCcugCCg -3'
miRNA:   3'- -GGUGGca--GUCCGGC-GCGUGCGcuaGG- -5'
30782 5' -59.1 NC_006552.1 + 5421 0.7 0.377834
Target:  5'- uUCGCCaUCAGGCUGCGCGCcaGUuGUUCg -3'
miRNA:   3'- -GGUGGcAGUCCGGCGCGUG--CGcUAGG- -5'
30782 5' -59.1 NC_006552.1 + 8412 0.72 0.293396
Target:  5'- aCUGCuCGgggcUCAGGCCGCGCcagGCGCGcagcaGUCCc -3'
miRNA:   3'- -GGUG-GC----AGUCCGGCGCG---UGCGC-----UAGG- -5'
30782 5' -59.1 NC_006552.1 + 9147 0.73 0.235852
Target:  5'- gCCGCCGUCAcccugcgcguaGCCGCucgcggcaucCGCGCGAUCCg -3'
miRNA:   3'- -GGUGGCAGUc----------CGGCGc---------GUGCGCUAGG- -5'
30782 5' -59.1 NC_006552.1 + 9666 0.7 0.393981
Target:  5'- gCCugCaUCAaucauucGaGCCGC-CACGCGAUCCa -3'
miRNA:   3'- -GGugGcAGU-------C-CGGCGcGUGCGCUAGG- -5'
30782 5' -59.1 NC_006552.1 + 13683 0.74 0.202977
Target:  5'- aCgGgCGUcCAGuGCCgccugGCGCACGCGAUCCu -3'
miRNA:   3'- -GgUgGCA-GUC-CGG-----CGCGUGCGCUAGG- -5'
30782 5' -59.1 NC_006552.1 + 14093 0.78 0.117505
Target:  5'- aCgGCCGgcCGGGCCGCGCuucaugucGCGCGcAUCCg -3'
miRNA:   3'- -GgUGGCa-GUCCGGCGCG--------UGCGC-UAGG- -5'
30782 5' -59.1 NC_006552.1 + 14560 0.67 0.567071
Target:  5'- -gGCCGUCcagcacauGGCCGU-CACGCGAcaCCa -3'
miRNA:   3'- ggUGGCAGu-------CCGGCGcGUGCGCUa-GG- -5'
30782 5' -59.1 NC_006552.1 + 17136 0.66 0.618955
Target:  5'- gCCACgGaUAGGCCaaggucgcGCGCAUGCccGAUCa -3'
miRNA:   3'- -GGUGgCaGUCCGG--------CGCGUGCG--CUAGg -5'
30782 5' -59.1 NC_006552.1 + 18474 0.69 0.403531
Target:  5'- aCCGCCGcaAGcGCCccaCGCACGcCGGUCCc -3'
miRNA:   3'- -GGUGGCagUC-CGGc--GCGUGC-GCUAGG- -5'
30782 5' -59.1 NC_006552.1 + 20296 0.7 0.386277
Target:  5'- gCCAgCGUCucgaAGGCCGCGUucuGCGCguugaacaggcuGAUCUg -3'
miRNA:   3'- -GGUgGCAG----UCCGGCGCG---UGCG------------CUAGG- -5'
30782 5' -59.1 NC_006552.1 + 20963 0.66 0.608526
Target:  5'- gCACCGggauGGCCGUcauGCucgGCGCG-UCCg -3'
miRNA:   3'- gGUGGCagu-CCGGCG---CG---UGCGCuAGG- -5'
30782 5' -59.1 NC_006552.1 + 21800 0.67 0.556808
Target:  5'- gCCGCCGUCcuGGUCGCccccCACgGUGAugUCCu -3'
miRNA:   3'- -GGUGGCAGu-CCGGCGc---GUG-CGCU--AGG- -5'
30782 5' -59.1 NC_006552.1 + 21846 0.68 0.496578
Target:  5'- gCAuCCGauacCAGGUCGCGCGcCGCcagauGGUCCa -3'
miRNA:   3'- gGU-GGCa---GUCCGGCGCGU-GCG-----CUAGG- -5'
30782 5' -59.1 NC_006552.1 + 22145 1.13 0.000332
Target:  5'- uCCACCGUCAGGCCGCGCACGCGAUCCa -3'
miRNA:   3'- -GGUGGCAGUCCGGCGCGUGCGCUAGG- -5'
30782 5' -59.1 NC_006552.1 + 22395 0.73 0.241747
Target:  5'- gCACCGUCucGCUGaUGCGCGCGGUgCu -3'
miRNA:   3'- gGUGGCAGucCGGC-GCGUGCGCUAgG- -5'
30782 5' -59.1 NC_006552.1 + 26327 0.72 0.273078
Target:  5'- gCCACCauucgcucgcGUCAGGUagagGCGCGCGcCGGUCa -3'
miRNA:   3'- -GGUGG----------CAGUCCGg---CGCGUGC-GCUAGg -5'
30782 5' -59.1 NC_006552.1 + 26547 0.66 0.598116
Target:  5'- uCCAgCGUCAGG-CGCucgGCcUGCGcgCCa -3'
miRNA:   3'- -GGUgGCAGUCCgGCG---CGuGCGCuaGG- -5'
30782 5' -59.1 NC_006552.1 + 29804 0.66 0.618955
Target:  5'- uUCGCCGgCGGGCCGCcacccaGCGUGAc-- -3'
miRNA:   3'- -GGUGGCaGUCCGGCGcg----UGCGCUagg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.