Results 21 - 38 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30782 | 5' | -59.1 | NC_006552.1 | + | 31398 | 0.68 | 0.476183 |
Target: 5'- gCACCGUC-GGCgGCGC-CGCcagugguGGUCUu -3' miRNA: 3'- gGUGGCAGuCCGgCGCGuGCG-------CUAGG- -5' |
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30782 | 5' | -59.1 | NC_006552.1 | + | 31883 | 0.68 | 0.486815 |
Target: 5'- -aGCCGUgAaagcggcuucGGCCaGCGCGgCGCGGUUCg -3' miRNA: 3'- ggUGGCAgU----------CCGG-CGCGU-GCGCUAGG- -5' |
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30782 | 5' | -59.1 | NC_006552.1 | + | 33553 | 0.67 | 0.52637 |
Target: 5'- gCgGCCGacagcagCAGGCCaGCGCcgaaauACGCGGcgUCCu -3' miRNA: 3'- -GgUGGCa------GUCCGG-CGCG------UGCGCU--AGG- -5' |
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30782 | 5' | -59.1 | NC_006552.1 | + | 34159 | 0.67 | 0.536452 |
Target: 5'- gCCAgaGcCuGGCCGCccagcagcaGgGCGCGGUCCa -3' miRNA: 3'- -GGUggCaGuCCGGCG---------CgUGCGCUAGG- -5' |
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30782 | 5' | -59.1 | NC_006552.1 | + | 38381 | 0.69 | 0.430306 |
Target: 5'- cCCACCaggGUCcGGCCG-GCGCGgaaguuguccaUGAUCCg -3' miRNA: 3'- -GGUGG---CAGuCCGGCgCGUGC-----------GCUAGG- -5' |
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30782 | 5' | -59.1 | NC_006552.1 | + | 38752 | 0.69 | 0.448724 |
Target: 5'- aCCACUGuUCAGGCUGUccuGCGCGUacUUCa -3' miRNA: 3'- -GGUGGC-AGUCCGGCG---CGUGCGcuAGG- -5' |
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30782 | 5' | -59.1 | NC_006552.1 | + | 39540 | 0.65 | 0.626261 |
Target: 5'- gUCGCCGUUcGGCgucacccgccagucUGUGCGCGUGAcagCCu -3' miRNA: 3'- -GGUGGCAGuCCG--------------GCGCGUGCGCUa--GG- -5' |
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30782 | 5' | -59.1 | NC_006552.1 | + | 41043 | 0.66 | 0.587731 |
Target: 5'- gCgGCCGUaGGGaaGCGCuCGCGGauuUCCu -3' miRNA: 3'- -GgUGGCAgUCCggCGCGuGCGCU---AGG- -5' |
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30782 | 5' | -59.1 | NC_006552.1 | + | 41115 | 0.7 | 0.394843 |
Target: 5'- aUCACC-UUA-GCCGCGU-CGCGGUCCu -3' miRNA: 3'- -GGUGGcAGUcCGGCGCGuGCGCUAGG- -5' |
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30782 | 5' | -59.1 | NC_006552.1 | + | 48448 | 0.67 | 0.51636 |
Target: 5'- aCUGCUGUCGucuGGCU-CGCugGCGuGUCCg -3' miRNA: 3'- -GGUGGCAGU---CCGGcGCGugCGC-UAGG- -5' |
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30782 | 5' | -59.1 | NC_006552.1 | + | 50052 | 0.66 | 0.576348 |
Target: 5'- gCCACCGaaCAGGaaGCGCagucugcaaucgaGCGCGAcaaCCg -3' miRNA: 3'- -GGUGGCa-GUCCggCGCG-------------UGCGCUa--GG- -5' |
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30782 | 5' | -59.1 | NC_006552.1 | + | 54112 | 0.66 | 0.618955 |
Target: 5'- cCUACCG-CAGGCUcugGCGCAuCGUcuGAgcgCCg -3' miRNA: 3'- -GGUGGCaGUCCGG---CGCGU-GCG--CUa--GG- -5' |
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30782 | 5' | -59.1 | NC_006552.1 | + | 55967 | 0.68 | 0.46757 |
Target: 5'- uCCGCCGcuUCAccGGCCGCGC-CGaaggccuguCGAUCa -3' miRNA: 3'- -GGUGGC--AGU--CCGGCGCGuGC---------GCUAGg -5' |
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30782 | 5' | -59.1 | NC_006552.1 | + | 56468 | 0.67 | 0.5466 |
Target: 5'- gCCGCCcuGUCAGGCaGgGCG-GCG-UCCa -3' miRNA: 3'- -GGUGG--CAGUCCGgCgCGUgCGCuAGG- -5' |
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30782 | 5' | -59.1 | NC_006552.1 | + | 59356 | 0.67 | 0.536452 |
Target: 5'- cCCGCCGcCGauGGCaGCGauCGCGCGAgCCa -3' miRNA: 3'- -GGUGGCaGU--CCGgCGC--GUGCGCUaGG- -5' |
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30782 | 5' | -59.1 | NC_006552.1 | + | 60234 | 0.69 | 0.412339 |
Target: 5'- aCACCGaacaguUCAuucgcaacgcGGCCGCGCGCGgGcuuUCCc -3' miRNA: 3'- gGUGGC------AGU----------CCGGCGCGUGCgCu--AGG- -5' |
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30782 | 5' | -59.1 | NC_006552.1 | + | 61024 | 0.73 | 0.253286 |
Target: 5'- aCGCCGaacuugaUCAGG-CGCGCugGCGG-CCg -3' miRNA: 3'- gGUGGC-------AGUCCgGCGCGugCGCUaGG- -5' |
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30782 | 5' | -59.1 | NC_006552.1 | + | 64645 | 0.66 | 0.608526 |
Target: 5'- aCGCUGUUc-GCCGCGC-CGcCGGUCa -3' miRNA: 3'- gGUGGCAGucCGGCGCGuGC-GCUAGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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