miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3079 3' -63.9 NC_001493.1 + 58653 1.06 0.000914
Target:  5'- aUACCGGUCGGUCGGCCCGCGGGACGAc -3'
miRNA:   3'- -AUGGCCAGCCAGCCGGGCGCCCUGCU- -5'
3079 3' -63.9 NC_001493.1 + 81776 0.71 0.306287
Target:  5'- -uCCGaGUCGGUCauGGCUCGCGcGACGGa -3'
miRNA:   3'- auGGC-CAGCCAG--CCGGGCGCcCUGCU- -5'
3079 3' -63.9 NC_001493.1 + 64260 0.7 0.319903
Target:  5'- aGCuCGGUCuc-CGGCCCGgGGGugGGa -3'
miRNA:   3'- aUG-GCCAGccaGCCGGGCgCCCugCU- -5'
3079 3' -63.9 NC_001493.1 + 96253 0.7 0.333966
Target:  5'- aUAUCGGaugaaUCGGggccguaGcGCCCGCGGGAUGAc -3'
miRNA:   3'- -AUGGCC-----AGCCag-----C-CGGGCGCCCUGCU- -5'
3079 3' -63.9 NC_001493.1 + 11202 0.69 0.363433
Target:  5'- cACgGGUC-GUCGaGCCCuCGGGAUGAc -3'
miRNA:   3'- aUGgCCAGcCAGC-CGGGcGCCCUGCU- -5'
3079 3' -63.9 NC_001493.1 + 126756 0.69 0.363433
Target:  5'- cACgGGUC-GUCGaGCCCuCGGGAUGAc -3'
miRNA:   3'- aUGgCCAGcCAGC-CGGGcGCCCUGCU- -5'
3079 3' -63.9 NC_001493.1 + 24170 0.69 0.394655
Target:  5'- aACCGGUugaCGGUgGgGUCCagGUGGGGCGAg -3'
miRNA:   3'- aUGGCCA---GCCAgC-CGGG--CGCCCUGCU- -5'
3079 3' -63.9 NC_001493.1 + 17639 0.68 0.445471
Target:  5'- gUACCGGgcccacguccucaaGGUUaucaaGGCCCGUGGGACc- -3'
miRNA:   3'- -AUGGCCag------------CCAG-----CCGGGCGCCCUGcu -5'
3079 3' -63.9 NC_001493.1 + 133194 0.68 0.445471
Target:  5'- gUACCGGgcccacguccucaaGGUUaucaaGGCCCGUGGGACc- -3'
miRNA:   3'- -AUGGCCag------------CCAG-----CCGGGCGCCCUGcu -5'
3079 3' -63.9 NC_001493.1 + 80213 0.67 0.462032
Target:  5'- -uCCGGggCGGUCuGCUCGUGGGA-GAg -3'
miRNA:   3'- auGGCCa-GCCAGcCGGGCGCCCUgCU- -5'
3079 3' -63.9 NC_001493.1 + 59786 0.67 0.462032
Target:  5'- gGCCGGcCGGUaacggaGGCCCGauuGACGAc -3'
miRNA:   3'- aUGGCCaGCCAg-----CCGGGCgccCUGCU- -5'
3079 3' -63.9 NC_001493.1 + 16257 0.67 0.462032
Target:  5'- -cUCGaG-CGGUCGaGCCC-CGGGACGGc -3'
miRNA:   3'- auGGC-CaGCCAGC-CGGGcGCCCUGCU- -5'
3079 3' -63.9 NC_001493.1 + 131811 0.67 0.462032
Target:  5'- -cUCGaG-CGGUCGaGCCC-CGGGACGGc -3'
miRNA:   3'- auGGC-CaGCCAGC-CGGGcGCCCUGCU- -5'
3079 3' -63.9 NC_001493.1 + 22410 0.67 0.479809
Target:  5'- -uCCGGaccuacCGG-CGGCCCGCGuGAUGAg -3'
miRNA:   3'- auGGCCa-----GCCaGCCGGGCGCcCUGCU- -5'
3079 3' -63.9 NC_001493.1 + 88461 0.67 0.479809
Target:  5'- uUACCGGUCGGUaCGGaggCgGaCGGGGUGAu -3'
miRNA:   3'- -AUGGCCAGCCA-GCCg--GgC-GCCCUGCU- -5'
3079 3' -63.9 NC_001493.1 + 5087 0.67 0.488822
Target:  5'- cAUCGGUcCGGUCGGUaucggUGCGGuuGACGAu -3'
miRNA:   3'- aUGGCCA-GCCAGCCGg----GCGCC--CUGCU- -5'
3079 3' -63.9 NC_001493.1 + 120642 0.67 0.488822
Target:  5'- cAUCGGUcCGGUCGGUaucggUGCGGuuGACGAu -3'
miRNA:   3'- aUGGCCA-GCCAGCCGg----GCGCC--CUGCU- -5'
3079 3' -63.9 NC_001493.1 + 63399 0.67 0.497002
Target:  5'- cACgGuGUCGGUCGcuCCCGCGGGcaucgugacauucGCGGu -3'
miRNA:   3'- aUGgC-CAGCCAGCc-GGGCGCCC-------------UGCU- -5'
3079 3' -63.9 NC_001493.1 + 63522 0.67 0.497002
Target:  5'- cACgGuGUCGGUCGcuCCCGCGGGcaucgugacauucGCGGu -3'
miRNA:   3'- aUGgC-CAGCCAGCc-GGGCGCCC-------------UGCU- -5'
3079 3' -63.9 NC_001493.1 + 47905 0.67 0.507081
Target:  5'- aGCUcG-CGGUCGGaCCCGCGGGuCu- -3'
miRNA:   3'- aUGGcCaGCCAGCC-GGGCGCCCuGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.