Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
3079 | 3' | -63.9 | NC_001493.1 | + | 58653 | 1.06 | 0.000914 |
Target: 5'- aUACCGGUCGGUCGGCCCGCGGGACGAc -3' miRNA: 3'- -AUGGCCAGCCAGCCGGGCGCCCUGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 61381 | 0.66 | 0.572033 |
Target: 5'- gGCCGGUgCGGcgaaggguagcgUCGGUUguuucagCGCGGGGCGc -3' miRNA: 3'- aUGGCCA-GCC------------AGCCGG-------GCGCCCUGCu -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 39368 | 0.66 | 0.553894 |
Target: 5'- cUACCGG-CGGUCGuuCC-CGGGuCGGg -3' miRNA: 3'- -AUGGCCaGCCAGCcgGGcGCCCuGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 63318 | 0.66 | 0.552944 |
Target: 5'- cACgGuGUCGGUCGauCCCGCGGGcuucgugacauucGCGGu -3' miRNA: 3'- aUGgC-CAGCCAGCc-GGGCGCCC-------------UGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 27515 | 0.66 | 0.522825 |
Target: 5'- aUGCCGGgCGGcCGGCCucuuuccucguacaCGCGGGGu-- -3' miRNA: 3'- -AUGGCCaGCCaGCCGG--------------GCGCCCUgcu -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 47905 | 0.67 | 0.507081 |
Target: 5'- aGCUcG-CGGUCGGaCCCGCGGGuCu- -3' miRNA: 3'- aUGGcCaGCCAGCC-GGGCGCCCuGcu -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 63522 | 0.67 | 0.497002 |
Target: 5'- cACgGuGUCGGUCGcuCCCGCGGGcaucgugacauucGCGGu -3' miRNA: 3'- aUGgC-CAGCCAGCc-GGGCGCCC-------------UGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 63399 | 0.67 | 0.497002 |
Target: 5'- cACgGuGUCGGUCGcuCCCGCGGGcaucgugacauucGCGGu -3' miRNA: 3'- aUGgC-CAGCCAGCc-GGGCGCCC-------------UGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 120642 | 0.67 | 0.488822 |
Target: 5'- cAUCGGUcCGGUCGGUaucggUGCGGuuGACGAu -3' miRNA: 3'- aUGGCCA-GCCAGCCGg----GCGCC--CUGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 5087 | 0.67 | 0.488822 |
Target: 5'- cAUCGGUcCGGUCGGUaucggUGCGGuuGACGAu -3' miRNA: 3'- aUGGCCA-GCCAGCCGg----GCGCC--CUGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 81776 | 0.71 | 0.306287 |
Target: 5'- -uCCGaGUCGGUCauGGCUCGCGcGACGGa -3' miRNA: 3'- auGGC-CAGCCAG--CCGGGCGCcCUGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 64260 | 0.7 | 0.319903 |
Target: 5'- aGCuCGGUCuc-CGGCCCGgGGGugGGa -3' miRNA: 3'- aUG-GCCAGccaGCCGGGCgCCCugCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 80213 | 0.67 | 0.462032 |
Target: 5'- -uCCGGggCGGUCuGCUCGUGGGA-GAg -3' miRNA: 3'- auGGCCa-GCCAGcCGGGCGCCCUgCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 59786 | 0.67 | 0.462032 |
Target: 5'- gGCCGGcCGGUaacggaGGCCCGauuGACGAc -3' miRNA: 3'- aUGGCCaGCCAg-----CCGGGCgccCUGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 22410 | 0.67 | 0.479809 |
Target: 5'- -uCCGGaccuacCGG-CGGCCCGCGuGAUGAg -3' miRNA: 3'- auGGCCa-----GCCaGCCGGGCGCcCUGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 88461 | 0.67 | 0.479809 |
Target: 5'- uUACCGGUCGGUaCGGaggCgGaCGGGGUGAu -3' miRNA: 3'- -AUGGCCAGCCA-GCCg--GgC-GCCCUGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 90182 | 0.66 | 0.572992 |
Target: 5'- cAUCGGUgUGGUCGGaCCGUucaaccaguGGGugGAc -3' miRNA: 3'- aUGGCCA-GCCAGCCgGGCG---------CCCugCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 126756 | 0.69 | 0.363433 |
Target: 5'- cACgGGUC-GUCGaGCCCuCGGGAUGAc -3' miRNA: 3'- aUGgCCAGcCAGC-CGGGcGCCCUGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 11202 | 0.69 | 0.363433 |
Target: 5'- cACgGGUC-GUCGaGCCCuCGGGAUGAc -3' miRNA: 3'- aUGgCCAGcCAGC-CGGGcGCCCUGCU- -5' |
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3079 | 3' | -63.9 | NC_001493.1 | + | 24170 | 0.69 | 0.394655 |
Target: 5'- aACCGGUugaCGGUgGgGUCCagGUGGGGCGAg -3' miRNA: 3'- aUGGCCA---GCCAgC-CGGG--CGCCCUGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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