Results 21 - 26 of 26 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30791 | 3' | -64.8 | NC_006552.1 | + | 48965 | 0.68 | 0.244081 |
Target: 5'- cCGCCCAcauucgcaugaacGUucCCCGCCUCccCGCCGGGc -3' miRNA: 3'- aGCGGGU-------------CA--GGGCGGGGucGCGGUCC- -5' |
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30791 | 3' | -64.8 | NC_006552.1 | + | 51167 | 0.72 | 0.115049 |
Target: 5'- gUCGCCgAGaaggCCCGCgCCaaAGCGCCAGu -3' miRNA: 3'- -AGCGGgUCa---GGGCGgGG--UCGCGGUCc -5' |
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30791 | 3' | -64.8 | NC_006552.1 | + | 52944 | 0.67 | 0.275508 |
Target: 5'- cUGCgCCGGcgCCCGCCgCCGGUGCggcaucCGGGu -3' miRNA: 3'- aGCG-GGUCa-GGGCGG-GGUCGCG------GUCC- -5' |
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30791 | 3' | -64.8 | NC_006552.1 | + | 53079 | 0.68 | 0.238855 |
Target: 5'- gUUGCCCAGUgaagaCCCGUgCCAGCcCCAc- -3' miRNA: 3'- -AGCGGGUCA-----GGGCGgGGUCGcGGUcc -5' |
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30791 | 3' | -64.8 | NC_006552.1 | + | 61443 | 0.66 | 0.338696 |
Target: 5'- gCGCCCGGg-CCGUacggcaauaCgAGUGCCGGGa -3' miRNA: 3'- aGCGGGUCagGGCGg--------GgUCGCGGUCC- -5' |
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30791 | 3' | -64.8 | NC_006552.1 | + | 63727 | 0.66 | 0.333423 |
Target: 5'- aUCGCCgAGUaCCCguGCCCCgagcaggacaacaugAccgccgccaauauGCGCCAGGu -3' miRNA: 3'- -AGCGGgUCA-GGG--CGGGG---------------U-------------CGCGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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