Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30792 | 3' | -56.8 | NC_006552.1 | + | 15118 | 1.03 | 0.001746 |
Target: 5'- gUUCGCCUCGAACUGGCGCGCGUUGAAc -3' miRNA: 3'- -AAGCGGAGCUUGACCGCGCGCAACUU- -5' |
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30792 | 3' | -56.8 | NC_006552.1 | + | 13219 | 0.69 | 0.438469 |
Target: 5'- gUCGCCUCcccACUGcGCGCGCGcugcaUGAGg -3' miRNA: 3'- aAGCGGAGcu-UGAC-CGCGCGCa----ACUU- -5' |
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30792 | 3' | -56.8 | NC_006552.1 | + | 20321 | 0.68 | 0.509052 |
Target: 5'- -gCGCgUUGAACaGGCugaucuGCGCGUUGAAc -3' miRNA: 3'- aaGCGgAGCUUGaCCG------CGCGCAACUU- -5' |
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30792 | 3' | -56.8 | NC_006552.1 | + | 33521 | 0.67 | 0.562253 |
Target: 5'- -gCGCCUUgcugGAACUGGUGCGCa----- -3' miRNA: 3'- aaGCGGAG----CUUGACCGCGCGcaacuu -5' |
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30792 | 3' | -56.8 | NC_006552.1 | + | 12953 | 0.67 | 0.573091 |
Target: 5'- cUgGCCUUGGcCUGGCGgUGCGUUcGAGg -3' miRNA: 3'- aAgCGGAGCUuGACCGC-GCGCAA-CUU- -5' |
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30792 | 3' | -56.8 | NC_006552.1 | + | 32479 | 0.67 | 0.573091 |
Target: 5'- -gCGCCacCGAACUGGUcgauGCGCGcgUGGAc -3' miRNA: 3'- aaGCGGa-GCUUGACCG----CGCGCa-ACUU- -5' |
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30792 | 3' | -56.8 | NC_006552.1 | + | 56921 | 0.66 | 0.627834 |
Target: 5'- -gCGCCcgcgcUGGACUGGCGCaacuaccccgauGCGUUGGc -3' miRNA: 3'- aaGCGGa----GCUUGACCGCG------------CGCAACUu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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