miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30805 3' -51.3 NC_006552.1 + 807 0.68 0.845335
Target:  5'- cGCGaAACUUCAUgUUCgCcAGGGCCGGg -3'
miRNA:   3'- -UGUaUUGAGGUAgGAG-GuUUCCGGCC- -5'
30805 3' -51.3 NC_006552.1 + 5579 0.66 0.920305
Target:  5'- ---cGACUUCAUCCaagcgCCGAAG-CCGGc -3'
miRNA:   3'- uguaUUGAGGUAGGa----GGUUUCcGGCC- -5'
30805 3' -51.3 NC_006552.1 + 5893 1.12 0.001996
Target:  5'- gACAUAACUCCAUCCUCCAAAGGCCGGg -3'
miRNA:   3'- -UGUAUUGAGGUAGGAGGUUUCCGGCC- -5'
30805 3' -51.3 NC_006552.1 + 10964 0.67 0.88615
Target:  5'- -gGUGGCacCCAggCCUCCAGccAGGCaCGGa -3'
miRNA:   3'- ugUAUUGa-GGUa-GGAGGUU--UCCG-GCC- -5'
30805 3' -51.3 NC_006552.1 + 17009 0.69 0.827334
Target:  5'- ------aUCCuucgCCUCCcGGGGCCGGa -3'
miRNA:   3'- uguauugAGGua--GGAGGuUUCCGGCC- -5'
30805 3' -51.3 NC_006552.1 + 22134 0.67 0.907481
Target:  5'- cCGUGGCaCCGUCCaCCGucAGGCCGc -3'
miRNA:   3'- uGUAUUGaGGUAGGaGGUu-UCCGGCc -5'
30805 3' -51.3 NC_006552.1 + 39160 0.66 0.914034
Target:  5'- gACGUGccGCcuUCCAUCaUUCCGAgaucGGGCUGGc -3'
miRNA:   3'- -UGUAU--UG--AGGUAG-GAGGUU----UCCGGCC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.