miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30807 5' -55.6 NC_006552.1 + 28400 0.66 0.753897
Target:  5'- aUCcg-GCGGCucgauGCUguaGCGCGGCucGAUGCu -3'
miRNA:   3'- -AGuaaCGCCG-----UGGa--CGUGCCG--CUACG- -5'
30807 5' -55.6 NC_006552.1 + 15965 0.66 0.743597
Target:  5'- uUC-UUGCcuccucGGCAgCCUGCugGaGCGcgGCc -3'
miRNA:   3'- -AGuAACG------CCGU-GGACGugC-CGCuaCG- -5'
30807 5' -55.6 NC_006552.1 + 15856 0.66 0.733185
Target:  5'- uUCcagGCGGC-CCUGCAgauCGGUGAcaggaucugaUGCc -3'
miRNA:   3'- -AGuaaCGCCGuGGACGU---GCCGCU----------ACG- -5'
30807 5' -55.6 NC_006552.1 + 12223 0.66 0.733185
Target:  5'- cUCAgcgcggGCGGCcauCCgcGCACGGCGcucgGUGUu -3'
miRNA:   3'- -AGUaa----CGCCGu--GGa-CGUGCCGC----UACG- -5'
30807 5' -55.6 NC_006552.1 + 53584 0.66 0.722674
Target:  5'- gUCGaUGUGGCGCCgGCcaguuCGGUGccGCc -3'
miRNA:   3'- -AGUaACGCCGUGGaCGu----GCCGCuaCG- -5'
30807 5' -55.6 NC_006552.1 + 38854 0.66 0.712074
Target:  5'- ---gUGcCGGUGCgUGUACGGCGugggaccaucGUGCa -3'
miRNA:   3'- aguaAC-GCCGUGgACGUGCCGC----------UACG- -5'
30807 5' -55.6 NC_006552.1 + 45039 0.66 0.701397
Target:  5'- uUCGaUGCGGUguucuCCUGC-UGGCG-UGCc -3'
miRNA:   3'- -AGUaACGCCGu----GGACGuGCCGCuACG- -5'
30807 5' -55.6 NC_006552.1 + 20436 0.67 0.690654
Target:  5'- cUCGaggGCcaGGccCugCUGCACGGCGAaGCg -3'
miRNA:   3'- -AGUaa-CG--CC--GugGACGUGCCGCUaCG- -5'
30807 5' -55.6 NC_006552.1 + 4777 0.67 0.687419
Target:  5'- gUCAccUGCGGCGCCaccacuacaGCccccaccugcggcgGgGGCGAUGCg -3'
miRNA:   3'- -AGUa-ACGCCGUGGa--------CG--------------UgCCGCUACG- -5'
30807 5' -55.6 NC_006552.1 + 25219 0.67 0.678772
Target:  5'- gCAgcGCGGCGCCguugacguugagcUGCGacgcugUGGCGAUGg -3'
miRNA:   3'- aGUaaCGCCGUGG-------------ACGU------GCCGCUACg -5'
30807 5' -55.6 NC_006552.1 + 32302 0.67 0.669011
Target:  5'- cUCGaUGCGGCACacgGCGuCGGCcugGCu -3'
miRNA:   3'- -AGUaACGCCGUGga-CGU-GCCGcuaCG- -5'
30807 5' -55.6 NC_006552.1 + 13626 0.67 0.658134
Target:  5'- --cUUGuCGGCacggGCCUGCuCGGCGGccugGCg -3'
miRNA:   3'- aguAAC-GCCG----UGGACGuGCCGCUa---CG- -5'
30807 5' -55.6 NC_006552.1 + 4507 0.67 0.636317
Target:  5'- ----aGCGGCuGCCaGCcauCGGCGAUGg -3'
miRNA:   3'- aguaaCGCCG-UGGaCGu--GCCGCUACg -5'
30807 5' -55.6 NC_006552.1 + 14759 0.68 0.625399
Target:  5'- ---cUGCGGCAUgucgGCGCGaGgGAUGCc -3'
miRNA:   3'- aguaACGCCGUGga--CGUGC-CgCUACG- -5'
30807 5' -55.6 NC_006552.1 + 25789 0.68 0.614486
Target:  5'- aCAga--GGUACCgGCACGGCcgguGAUGCc -3'
miRNA:   3'- aGUaacgCCGUGGaCGUGCCG----CUACG- -5'
30807 5' -55.6 NC_006552.1 + 10747 0.68 0.614486
Target:  5'- cCAUgGCGaugcGCugCUGCGCGGUGcucagggcAUGCa -3'
miRNA:   3'- aGUAaCGC----CGugGACGUGCCGC--------UACG- -5'
30807 5' -55.6 NC_006552.1 + 49714 0.68 0.607945
Target:  5'- ----cGCGGUGCUgaugaucgaggaagGCauuACGGCGAUGCg -3'
miRNA:   3'- aguaaCGCCGUGGa-------------CG---UGCCGCUACG- -5'
30807 5' -55.6 NC_006552.1 + 28016 0.68 0.603588
Target:  5'- ---cUGCGGCGa--GUACGGCGgcGCg -3'
miRNA:   3'- aguaACGCCGUggaCGUGCCGCuaCG- -5'
30807 5' -55.6 NC_006552.1 + 13209 0.69 0.569996
Target:  5'- cUCGUcgGCGGuCGCCuccccacUGCGCGcGCGcUGCa -3'
miRNA:   3'- -AGUAa-CGCC-GUGG-------ACGUGC-CGCuACG- -5'
30807 5' -55.6 NC_006552.1 + 35918 0.69 0.538999
Target:  5'- gCGUUGUaGCuuGCCUGCGCGGCcuggGCu -3'
miRNA:   3'- aGUAACGcCG--UGGACGUGCCGcua-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.