miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30807 5' -55.6 NC_006552.1 + 5122 1.13 0.000571
Target:  5'- gUCAUUGCGGCACCUGCACGGCGAUGCa -3'
miRNA:   3'- -AGUAACGCCGUGGACGUGCCGCUACG- -5'
30807 5' -55.6 NC_006552.1 + 21915 0.81 0.106381
Target:  5'- ----aGCaGCGCCUGCACGGCcuGAUGCg -3'
miRNA:   3'- aguaaCGcCGUGGACGUGCCG--CUACG- -5'
30807 5' -55.6 NC_006552.1 + 4734 0.75 0.258178
Target:  5'- cCGagGCGGCGucuCCUGCAccagcuuCGGCGGUGCc -3'
miRNA:   3'- aGUaaCGCCGU---GGACGU-------GCCGCUACG- -5'
30807 5' -55.6 NC_006552.1 + 63231 0.73 0.316011
Target:  5'- ----cGCGGCACgUGCGcCGGCuGUGCc -3'
miRNA:   3'- aguaaCGCCGUGgACGU-GCCGcUACG- -5'
30807 5' -55.6 NC_006552.1 + 12365 0.73 0.321443
Target:  5'- gCGUcGCGGCgcgcuucugcaacgGCCUGCGCgucGGCGGUGUc -3'
miRNA:   3'- aGUAaCGCCG--------------UGGACGUG---CCGCUACG- -5'
30807 5' -55.6 NC_006552.1 + 10616 0.72 0.390213
Target:  5'- aUCGaUGaUGGCGCCaGCagucucaccggccACGGCGAUGCu -3'
miRNA:   3'- -AGUaAC-GCCGUGGaCG-------------UGCCGCUACG- -5'
30807 5' -55.6 NC_006552.1 + 35525 0.71 0.418602
Target:  5'- aUCGgccGCGGUGCCgucuuccaGCACcuuGGCGAUGCu -3'
miRNA:   3'- -AGUaa-CGCCGUGGa-------CGUG---CCGCUACG- -5'
30807 5' -55.6 NC_006552.1 + 41127 0.71 0.447236
Target:  5'- gCGUcGCGGU-CCUGCGCGaUGAUGCc -3'
miRNA:   3'- aGUAaCGCCGuGGACGUGCcGCUACG- -5'
30807 5' -55.6 NC_006552.1 + 31892 0.71 0.457021
Target:  5'- ----aGCGGCuucgGCCaGCGCGGCGcgGUu -3'
miRNA:   3'- aguaaCGCCG----UGGaCGUGCCGCuaCG- -5'
30807 5' -55.6 NC_006552.1 + 22842 0.7 0.476927
Target:  5'- -aGUUGCGGUAggUGUACGGCccacaGAUGCc -3'
miRNA:   3'- agUAACGCCGUggACGUGCCG-----CUACG- -5'
30807 5' -55.6 NC_006552.1 + 26511 0.69 0.517959
Target:  5'- -----cCGGCGCCUGCcaccagcaGCGGCGgcGCc -3'
miRNA:   3'- aguaacGCCGUGGACG--------UGCCGCuaCG- -5'
30807 5' -55.6 NC_006552.1 + 19615 0.69 0.52844
Target:  5'- ---cUGCGcCugCUGUACGGCGuucUGCa -3'
miRNA:   3'- aguaACGCcGugGACGUGCCGCu--ACG- -5'
30807 5' -55.6 NC_006552.1 + 35918 0.69 0.538999
Target:  5'- gCGUUGUaGCuuGCCUGCGCGGCcuggGCu -3'
miRNA:   3'- aGUAACGcCG--UGGACGUGCCGcua-CG- -5'
30807 5' -55.6 NC_006552.1 + 13209 0.69 0.569996
Target:  5'- cUCGUcgGCGGuCGCCuccccacUGCGCGcGCGcUGCa -3'
miRNA:   3'- -AGUAa-CGCC-GUGG-------ACGUGC-CGCuACG- -5'
30807 5' -55.6 NC_006552.1 + 28016 0.68 0.603588
Target:  5'- ---cUGCGGCGa--GUACGGCGgcGCg -3'
miRNA:   3'- aguaACGCCGUggaCGUGCCGCuaCG- -5'
30807 5' -55.6 NC_006552.1 + 49714 0.68 0.607945
Target:  5'- ----cGCGGUGCUgaugaucgaggaagGCauuACGGCGAUGCg -3'
miRNA:   3'- aguaaCGCCGUGGa-------------CG---UGCCGCUACG- -5'
30807 5' -55.6 NC_006552.1 + 10747 0.68 0.614486
Target:  5'- cCAUgGCGaugcGCugCUGCGCGGUGcucagggcAUGCa -3'
miRNA:   3'- aGUAaCGC----CGugGACGUGCCGC--------UACG- -5'
30807 5' -55.6 NC_006552.1 + 25789 0.68 0.614486
Target:  5'- aCAga--GGUACCgGCACGGCcgguGAUGCc -3'
miRNA:   3'- aGUaacgCCGUGGaCGUGCCG----CUACG- -5'
30807 5' -55.6 NC_006552.1 + 14759 0.68 0.625399
Target:  5'- ---cUGCGGCAUgucgGCGCGaGgGAUGCc -3'
miRNA:   3'- aguaACGCCGUGga--CGUGC-CgCUACG- -5'
30807 5' -55.6 NC_006552.1 + 4507 0.67 0.636317
Target:  5'- ----aGCGGCuGCCaGCcauCGGCGAUGg -3'
miRNA:   3'- aguaaCGCCG-UGGaCGu--GCCGCUACg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.