Results 21 - 32 of 32 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30807 | 5' | -55.6 | NC_006552.1 | + | 13626 | 0.67 | 0.658134 |
Target: 5'- --cUUGuCGGCacggGCCUGCuCGGCGGccugGCg -3' miRNA: 3'- aguAAC-GCCG----UGGACGuGCCGCUa---CG- -5' |
|||||||
30807 | 5' | -55.6 | NC_006552.1 | + | 32302 | 0.67 | 0.669011 |
Target: 5'- cUCGaUGCGGCACacgGCGuCGGCcugGCu -3' miRNA: 3'- -AGUaACGCCGUGga-CGU-GCCGcuaCG- -5' |
|||||||
30807 | 5' | -55.6 | NC_006552.1 | + | 25219 | 0.67 | 0.678772 |
Target: 5'- gCAgcGCGGCGCCguugacguugagcUGCGacgcugUGGCGAUGg -3' miRNA: 3'- aGUaaCGCCGUGG-------------ACGU------GCCGCUACg -5' |
|||||||
30807 | 5' | -55.6 | NC_006552.1 | + | 4777 | 0.67 | 0.687419 |
Target: 5'- gUCAccUGCGGCGCCaccacuacaGCccccaccugcggcgGgGGCGAUGCg -3' miRNA: 3'- -AGUa-ACGCCGUGGa--------CG--------------UgCCGCUACG- -5' |
|||||||
30807 | 5' | -55.6 | NC_006552.1 | + | 20436 | 0.67 | 0.690654 |
Target: 5'- cUCGaggGCcaGGccCugCUGCACGGCGAaGCg -3' miRNA: 3'- -AGUaa-CG--CC--GugGACGUGCCGCUaCG- -5' |
|||||||
30807 | 5' | -55.6 | NC_006552.1 | + | 45039 | 0.66 | 0.701397 |
Target: 5'- uUCGaUGCGGUguucuCCUGC-UGGCG-UGCc -3' miRNA: 3'- -AGUaACGCCGu----GGACGuGCCGCuACG- -5' |
|||||||
30807 | 5' | -55.6 | NC_006552.1 | + | 38854 | 0.66 | 0.712074 |
Target: 5'- ---gUGcCGGUGCgUGUACGGCGugggaccaucGUGCa -3' miRNA: 3'- aguaAC-GCCGUGgACGUGCCGC----------UACG- -5' |
|||||||
30807 | 5' | -55.6 | NC_006552.1 | + | 53584 | 0.66 | 0.722674 |
Target: 5'- gUCGaUGUGGCGCCgGCcaguuCGGUGccGCc -3' miRNA: 3'- -AGUaACGCCGUGGaCGu----GCCGCuaCG- -5' |
|||||||
30807 | 5' | -55.6 | NC_006552.1 | + | 12223 | 0.66 | 0.733185 |
Target: 5'- cUCAgcgcggGCGGCcauCCgcGCACGGCGcucgGUGUu -3' miRNA: 3'- -AGUaa----CGCCGu--GGa-CGUGCCGC----UACG- -5' |
|||||||
30807 | 5' | -55.6 | NC_006552.1 | + | 15856 | 0.66 | 0.733185 |
Target: 5'- uUCcagGCGGC-CCUGCAgauCGGUGAcaggaucugaUGCc -3' miRNA: 3'- -AGuaaCGCCGuGGACGU---GCCGCU----------ACG- -5' |
|||||||
30807 | 5' | -55.6 | NC_006552.1 | + | 15965 | 0.66 | 0.743597 |
Target: 5'- uUC-UUGCcuccucGGCAgCCUGCugGaGCGcgGCc -3' miRNA: 3'- -AGuAACG------CCGU-GGACGugC-CGCuaCG- -5' |
|||||||
30807 | 5' | -55.6 | NC_006552.1 | + | 28400 | 0.66 | 0.753897 |
Target: 5'- aUCcg-GCGGCucgauGCUguaGCGCGGCucGAUGCu -3' miRNA: 3'- -AGuaaCGCCG-----UGGa--CGUGCCG--CUACG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home