miRNA display CGI


Results 21 - 32 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30807 5' -55.6 NC_006552.1 + 28016 0.68 0.603588
Target:  5'- ---cUGCGGCGa--GUACGGCGgcGCg -3'
miRNA:   3'- aguaACGCCGUggaCGUGCCGCuaCG- -5'
30807 5' -55.6 NC_006552.1 + 28400 0.66 0.753897
Target:  5'- aUCcg-GCGGCucgauGCUguaGCGCGGCucGAUGCu -3'
miRNA:   3'- -AGuaaCGCCG-----UGGa--CGUGCCG--CUACG- -5'
30807 5' -55.6 NC_006552.1 + 31892 0.71 0.457021
Target:  5'- ----aGCGGCuucgGCCaGCGCGGCGcgGUu -3'
miRNA:   3'- aguaaCGCCG----UGGaCGUGCCGCuaCG- -5'
30807 5' -55.6 NC_006552.1 + 32302 0.67 0.669011
Target:  5'- cUCGaUGCGGCACacgGCGuCGGCcugGCu -3'
miRNA:   3'- -AGUaACGCCGUGga-CGU-GCCGcuaCG- -5'
30807 5' -55.6 NC_006552.1 + 35525 0.71 0.418602
Target:  5'- aUCGgccGCGGUGCCgucuuccaGCACcuuGGCGAUGCu -3'
miRNA:   3'- -AGUaa-CGCCGUGGa-------CGUG---CCGCUACG- -5'
30807 5' -55.6 NC_006552.1 + 35918 0.69 0.538999
Target:  5'- gCGUUGUaGCuuGCCUGCGCGGCcuggGCu -3'
miRNA:   3'- aGUAACGcCG--UGGACGUGCCGcua-CG- -5'
30807 5' -55.6 NC_006552.1 + 38854 0.66 0.712074
Target:  5'- ---gUGcCGGUGCgUGUACGGCGugggaccaucGUGCa -3'
miRNA:   3'- aguaAC-GCCGUGgACGUGCCGC----------UACG- -5'
30807 5' -55.6 NC_006552.1 + 41127 0.71 0.447236
Target:  5'- gCGUcGCGGU-CCUGCGCGaUGAUGCc -3'
miRNA:   3'- aGUAaCGCCGuGGACGUGCcGCUACG- -5'
30807 5' -55.6 NC_006552.1 + 45039 0.66 0.701397
Target:  5'- uUCGaUGCGGUguucuCCUGC-UGGCG-UGCc -3'
miRNA:   3'- -AGUaACGCCGu----GGACGuGCCGCuACG- -5'
30807 5' -55.6 NC_006552.1 + 49714 0.68 0.607945
Target:  5'- ----cGCGGUGCUgaugaucgaggaagGCauuACGGCGAUGCg -3'
miRNA:   3'- aguaaCGCCGUGGa-------------CG---UGCCGCUACG- -5'
30807 5' -55.6 NC_006552.1 + 53584 0.66 0.722674
Target:  5'- gUCGaUGUGGCGCCgGCcaguuCGGUGccGCc -3'
miRNA:   3'- -AGUaACGCCGUGGaCGu----GCCGCuaCG- -5'
30807 5' -55.6 NC_006552.1 + 63231 0.73 0.316011
Target:  5'- ----cGCGGCACgUGCGcCGGCuGUGCc -3'
miRNA:   3'- aguaaCGCCGUGgACGU-GCCGcUACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.