miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30809 5' -55.3 NC_006552.1 + 41157 0.66 0.773516
Target:  5'- -cGCUGGuCGCCGUUGaacagcgcauggUCCAGCc -3'
miRNA:   3'- caUGGCCuGCGGCAACgaua--------GGGUCG- -5'
30809 5' -55.3 NC_006552.1 + 33218 0.66 0.771524
Target:  5'- -gGCCaGGAUGCCGc-GCUGcaugucuUCCgGGCa -3'
miRNA:   3'- caUGG-CCUGCGGCaaCGAU-------AGGgUCG- -5'
30809 5' -55.3 NC_006552.1 + 34750 0.66 0.762489
Target:  5'- uUACCacGGGCGCCGgccagGUgaa-CCAGCa -3'
miRNA:   3'- cAUGG--CCUGCGGCaa---CGauagGGUCG- -5'
30809 5' -55.3 NC_006552.1 + 45780 0.66 0.752328
Target:  5'- -aAgCGGuACGCCGUguccgGCUuGUCCguCAGCa -3'
miRNA:   3'- caUgGCC-UGCGGCAa----CGA-UAGG--GUCG- -5'
30809 5' -55.3 NC_006552.1 + 21648 0.66 0.742047
Target:  5'- cUGCCGGcCaCCGgcugGCUGUCaccguCCAGCg -3'
miRNA:   3'- cAUGGCCuGcGGCaa--CGAUAG-----GGUCG- -5'
30809 5' -55.3 NC_006552.1 + 38954 0.66 0.731657
Target:  5'- -gGCCGGACGCCagcgcgauGUUGUg--CgCCAGg -3'
miRNA:   3'- caUGGCCUGCGG--------CAACGauaG-GGUCg -5'
30809 5' -55.3 NC_006552.1 + 16374 0.66 0.731657
Target:  5'- -cGCCGGccCGCCcauaGCcAUCCCGGCc -3'
miRNA:   3'- caUGGCCu-GCGGcaa-CGaUAGGGUCG- -5'
30809 5' -55.3 NC_006552.1 + 59918 0.66 0.731657
Target:  5'- -cACCaaGGcGCGCCGgaccgUGCUGU-CCGGCu -3'
miRNA:   3'- caUGG--CC-UGCGGCa----ACGAUAgGGUCG- -5'
30809 5' -55.3 NC_006552.1 + 22602 0.67 0.72117
Target:  5'- cGUACCGGGCGUCGccgaugGCgacAUgCaCGGCg -3'
miRNA:   3'- -CAUGGCCUGCGGCaa----CGa--UAgG-GUCG- -5'
30809 5' -55.3 NC_006552.1 + 15211 0.67 0.72117
Target:  5'- gGUGCCGGuCGCCuugcgGUUGgUGUCCaC-GCu -3'
miRNA:   3'- -CAUGGCCuGCGG-----CAACgAUAGG-GuCG- -5'
30809 5' -55.3 NC_006552.1 + 26529 0.67 0.710596
Target:  5'- -aGCgGcGGCGCCGggGUg--UCCAGCg -3'
miRNA:   3'- caUGgC-CUGCGGCaaCGauaGGGUCG- -5'
30809 5' -55.3 NC_006552.1 + 13003 0.67 0.710596
Target:  5'- cUGCuCGG--GCCGUaGCUGcggCCCAGCg -3'
miRNA:   3'- cAUG-GCCugCGGCAaCGAUa--GGGUCG- -5'
30809 5' -55.3 NC_006552.1 + 65082 0.67 0.710596
Target:  5'- -aACCuGGACGCCGccgGCg---CCGGCa -3'
miRNA:   3'- caUGG-CCUGCGGCaa-CGauagGGUCG- -5'
30809 5' -55.3 NC_006552.1 + 31972 0.67 0.689234
Target:  5'- -gACCaGAUGCCGguggUGCUcggcgugaAUCuCCGGCu -3'
miRNA:   3'- caUGGcCUGCGGCa---ACGA--------UAG-GGUCG- -5'
30809 5' -55.3 NC_006552.1 + 62972 0.67 0.667657
Target:  5'- -gGCCGG-CGCCGUU-CUucUgCCGGCg -3'
miRNA:   3'- caUGGCCuGCGGCAAcGAu-AgGGUCG- -5'
30809 5' -55.3 NC_006552.1 + 41763 0.67 0.667657
Target:  5'- -gAgCGGGCGCCGUcggacagguUGCgggUAUCCauCAGCa -3'
miRNA:   3'- caUgGCCUGCGGCA---------ACG---AUAGG--GUCG- -5'
30809 5' -55.3 NC_006552.1 + 35884 0.67 0.667657
Target:  5'- cUGCCGuGGCGCgCGcUGCUgccucAUCCCgcaGGCg -3'
miRNA:   3'- cAUGGC-CUGCG-GCaACGA-----UAGGG---UCG- -5'
30809 5' -55.3 NC_006552.1 + 18170 0.67 0.667657
Target:  5'- uGUGCCGGAgaaGCUGUUGCccaCCCGuGUc -3'
miRNA:   3'- -CAUGGCCUg--CGGCAACGauaGGGU-CG- -5'
30809 5' -55.3 NC_006552.1 + 50170 0.68 0.635073
Target:  5'- cGUACUGcGCGCUGgucgGCUAUCUgccgCAGCa -3'
miRNA:   3'- -CAUGGCcUGCGGCaa--CGAUAGG----GUCG- -5'
30809 5' -55.3 NC_006552.1 + 53536 0.69 0.570076
Target:  5'- aUGCCGGACGCCcaagccUGCg--CCC-GCa -3'
miRNA:   3'- cAUGGCCUGCGGca----ACGauaGGGuCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.