Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30809 | 5' | -55.3 | NC_006552.1 | + | 18795 | 0.69 | 0.552971 |
Target: 5'- cGUGCCuGGGCGUuggcgguauagagauUGUcGCUguAUCCCGGCg -3' miRNA: 3'- -CAUGG-CCUGCG---------------GCAaCGA--UAGGGUCG- -5' |
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30809 | 5' | -55.3 | NC_006552.1 | + | 8586 | 0.7 | 0.538132 |
Target: 5'- aUACCGGcuuggccacCGCC-UUGUUGUCCuCAGCg -3' miRNA: 3'- cAUGGCCu--------GCGGcAACGAUAGG-GUCG- -5' |
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30809 | 5' | -55.3 | NC_006552.1 | + | 34133 | 0.7 | 0.498604 |
Target: 5'- aGUGCuCGGAUGCCGcccaggcUUGCgccagagccuggccgCCCAGCa -3' miRNA: 3'- -CAUG-GCCUGCGGC-------AACGaua------------GGGUCG- -5' |
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30809 | 5' | -55.3 | NC_006552.1 | + | 29029 | 0.71 | 0.446751 |
Target: 5'- cGUGCCGaAUGCCGa-GgaAUCCCAGCc -3' miRNA: 3'- -CAUGGCcUGCGGCaaCgaUAGGGUCG- -5' |
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30809 | 5' | -55.3 | NC_006552.1 | + | 3516 | 1.12 | 0.000762 |
Target: 5'- uGUACCGGACGCCGUUGCUAUCCCAGCa -3' miRNA: 3'- -CAUGGCCUGCGGCAACGAUAGGGUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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