miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30810 5' -60.1 NC_006552.1 + 61503 0.66 0.521249
Target:  5'- ---aCGuGCG-CGCCcGGGCCGAguaCGGCg -3'
miRNA:   3'- auucGC-CGCuGCGGaCUCGGCU---GCCG- -5'
30810 5' -60.1 NC_006552.1 + 56872 0.66 0.521249
Target:  5'- cGAGCGGCGaACGCagGGGUuccgcucaaCGuCGGCg -3'
miRNA:   3'- aUUCGCCGC-UGCGgaCUCG---------GCuGCCG- -5'
30810 5' -60.1 NC_006552.1 + 21153 0.66 0.520235
Target:  5'- -cGGCGGCGACGCgauagGcgcauccGGCCGcguCGGUg -3'
miRNA:   3'- auUCGCCGCUGCGga---C-------UCGGCu--GCCG- -5'
30810 5' -60.1 NC_006552.1 + 48320 0.66 0.516188
Target:  5'- -cGGCGGCGACcguugcuGCCUGGaauuccgcauaccCCGcCGGCa -3'
miRNA:   3'- auUCGCCGCUG-------CGGACUc------------GGCuGCCG- -5'
30810 5' -60.1 NC_006552.1 + 61169 0.66 0.501128
Target:  5'- cGAGCcauGCGACcacgcucggcaaGCCUGcGCCGAuauCGGCu -3'
miRNA:   3'- aUUCGc--CGCUG------------CGGACuCGGCU---GCCG- -5'
30810 5' -60.1 NC_006552.1 + 22516 0.66 0.495158
Target:  5'- gAAGUGGUGGgcCGCCUugugaucggcGAGCgcgguaugcccccagCGGCGGCg -3'
miRNA:   3'- aUUCGCCGCU--GCGGA----------CUCG---------------GCUGCCG- -5'
30810 5' -60.1 NC_006552.1 + 51019 0.66 0.481357
Target:  5'- gAAGCuGaaaGAgCGCCUG-GCCGAugcCGGCg -3'
miRNA:   3'- aUUCGcCg--CU-GCGGACuCGGCU---GCCG- -5'
30810 5' -60.1 NC_006552.1 + 10766 0.66 0.481357
Target:  5'- --cGCGGUGcucagggcAUGCagauUGGcGCCGACGGCa -3'
miRNA:   3'- auuCGCCGC--------UGCGg---ACU-CGGCUGCCG- -5'
30810 5' -60.1 NC_006552.1 + 49987 0.66 0.471614
Target:  5'- ----aGGCcuacuACGUUcGAGCCGACGGCa -3'
miRNA:   3'- auucgCCGc----UGCGGaCUCGGCUGCCG- -5'
30810 5' -60.1 NC_006552.1 + 12399 0.66 0.471614
Target:  5'- -cGGCGGUGuCGCCUGucaccAGCUuACGGa -3'
miRNA:   3'- auUCGCCGCuGCGGAC-----UCGGcUGCCg -5'
30810 5' -60.1 NC_006552.1 + 51395 0.67 0.452434
Target:  5'- gAAGUacGCGACGCUgccgGAcgccaauaccGCCGAUGGCu -3'
miRNA:   3'- aUUCGc-CGCUGCGGa---CU----------CGGCUGCCG- -5'
30810 5' -60.1 NC_006552.1 + 56982 0.67 0.446764
Target:  5'- aGGGCGuggugaucgagaaccGCGACGCuCUGGuGCUGAUGGa -3'
miRNA:   3'- aUUCGC---------------CGCUGCG-GACU-CGGCUGCCg -5'
30810 5' -60.1 NC_006552.1 + 25239 0.67 0.443006
Target:  5'- uUGAGCuGCGACG-CUGuGgCGAUGGUu -3'
miRNA:   3'- -AUUCGcCGCUGCgGACuCgGCUGCCG- -5'
30810 5' -60.1 NC_006552.1 + 4736 0.67 0.443006
Target:  5'- gAGGCGGCGuCuCCUGcaccAGCuuCGGCGGUg -3'
miRNA:   3'- aUUCGCCGCuGcGGAC----UCG--GCUGCCG- -5'
30810 5' -60.1 NC_006552.1 + 64304 0.67 0.440199
Target:  5'- --uGCGGCgGACGCCUgguccucaucaaGAGCgacgaccaggaagaUGACGGUg -3'
miRNA:   3'- auuCGCCG-CUGCGGA------------CUCG--------------GCUGCCG- -5'
30810 5' -60.1 NC_006552.1 + 14297 0.67 0.433689
Target:  5'- gAAGUauucGGCGcGgGCCUGGGCCu-CGGCc -3'
miRNA:   3'- aUUCG----CCGC-UgCGGACUCGGcuGCCG- -5'
30810 5' -60.1 NC_006552.1 + 49006 0.67 0.424486
Target:  5'- cAAGCccGGCGGCGCgaGcguucAGCCGAauGCa -3'
miRNA:   3'- aUUCG--CCGCUGCGgaC-----UCGGCUgcCG- -5'
30810 5' -60.1 NC_006552.1 + 21992 0.67 0.424486
Target:  5'- --uGCaGCGccccaguCGCCUGAucGCUGACGGUg -3'
miRNA:   3'- auuCGcCGCu------GCGGACU--CGGCUGCCG- -5'
30810 5' -60.1 NC_006552.1 + 26892 0.68 0.406438
Target:  5'- ---uCGGCGACGUugUUGAuGCCGgccaGCGGCa -3'
miRNA:   3'- auucGCCGCUGCG--GACU-CGGC----UGCCG- -5'
30810 5' -60.1 NC_006552.1 + 2058 0.68 0.388014
Target:  5'- uUGAGCGcGcCGGCGUcgugcgcggccugCUGAucgaacucgacGCCGGCGGCa -3'
miRNA:   3'- -AUUCGC-C-GCUGCG-------------GACU-----------CGGCUGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.