miRNA display CGI


Results 1 - 20 of 34 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30813 3' -65.7 NC_006552.1 + 53124 0.66 0.291321
Target:  5'- cGCUCUGcUCUgCGauGCCGCCGGCAa -3'
miRNA:   3'- -UGAGGCuGGGgGCggCGGCGGUCGUg -5'
30813 3' -65.7 NC_006552.1 + 5575 0.66 0.290644
Target:  5'- cCUCCGACUUCauccaagCGCCGaaGCCGGC-Ca -3'
miRNA:   3'- uGAGGCUGGGG-------GCGGCggCGGUCGuG- -5'
30813 3' -65.7 NC_006552.1 + 8208 0.66 0.284608
Target:  5'- gUUCCuucacAUCCUCGCCGCCGa-AGCGCa -3'
miRNA:   3'- uGAGGc----UGGGGGCGGCGGCggUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 14406 0.66 0.278019
Target:  5'- uGCUUCGcuucaaccgugGCgCCCUGcCCGCUGCUGGCAUc -3'
miRNA:   3'- -UGAGGC-----------UG-GGGGC-GGCGGCGGUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 58339 0.66 0.277367
Target:  5'- cCUCCuGGCCUCgcgggggcaguuuCGCCGUgGCCAGCcCa -3'
miRNA:   3'- uGAGG-CUGGGG-------------GCGGCGgCGGUCGuG- -5'
30813 3' -65.7 NC_006552.1 + 62436 0.66 0.271551
Target:  5'- --cCCGACgugCCCGCCGgCGuuCCGGCGCc -3'
miRNA:   3'- ugaGGCUGg--GGGCGGCgGC--GGUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 36097 0.66 0.265205
Target:  5'- aGCgCCGGCgucacccgcgCCCUGCUGCgCGCCAGUg- -3'
miRNA:   3'- -UGaGGCUG----------GGGGCGGCG-GCGGUCGug -5'
30813 3' -65.7 NC_006552.1 + 63476 0.66 0.265205
Target:  5'- uGCUU---CCgCUGCCgGCCGCCGGCGCc -3'
miRNA:   3'- -UGAGgcuGGgGGCGG-CGGCGGUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 53592 0.66 0.265205
Target:  5'- gGCgCCGGCCaguUCGgUGCCGCCGGCu- -3'
miRNA:   3'- -UGaGGCUGGg--GGCgGCGGCGGUCGug -5'
30813 3' -65.7 NC_006552.1 + 54522 0.66 0.25898
Target:  5'- cAC-CCGccgcaagcgcACCUUCGCCGCaaucauGCCGGCGCa -3'
miRNA:   3'- -UGaGGC----------UGGGGGCGGCGg-----CGGUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 65062 0.66 0.258364
Target:  5'- --aUCGACCaguaCUGCaacggaaccuggaCGCCGCCGGCGCc -3'
miRNA:   3'- ugaGGCUGGg---GGCG-------------GCGGCGGUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 16344 0.66 0.252875
Target:  5'- uGCggCCGGCUgaCCGCCaugcagaaccGCCGCCGGCcCg -3'
miRNA:   3'- -UGa-GGCUGGg-GGCGG----------CGGCGGUCGuG- -5'
30813 3' -65.7 NC_006552.1 + 52317 0.66 0.252875
Target:  5'- gACUagCC-ACCUCgCGCCGgccaCGCCGGCACa -3'
miRNA:   3'- -UGA--GGcUGGGG-GCGGCg---GCGGUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 7355 0.67 0.246888
Target:  5'- uGCUgCCcGCCCCaguuCCGCCGC-AGCGCg -3'
miRNA:   3'- -UGA-GGcUGGGGgc--GGCGGCGgUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 13004 0.67 0.24102
Target:  5'- uGCUCgGGCCgUaGCUGCgGcCCAGCGCa -3'
miRNA:   3'- -UGAGgCUGGgGgCGGCGgC-GGUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 24526 0.67 0.24102
Target:  5'- gGCgCUGACgCCCauaGCCGCCGaCCAccuGCAUg -3'
miRNA:   3'- -UGaGGCUG-GGGg--CGGCGGC-GGU---CGUG- -5'
30813 3' -65.7 NC_006552.1 + 52769 0.67 0.235268
Target:  5'- cGCUCCccACCCCCGagcagaUCGCCGCCcaGGCu- -3'
miRNA:   3'- -UGAGGc-UGGGGGC------GGCGGCGG--UCGug -5'
30813 3' -65.7 NC_006552.1 + 37648 0.68 0.213404
Target:  5'- cGCUCUcuGCCUCCGCUucuGCUGCCGGCc- -3'
miRNA:   3'- -UGAGGc-UGGGGGCGG---CGGCGGUCGug -5'
30813 3' -65.7 NC_006552.1 + 45404 0.68 0.208218
Target:  5'- gGCgCCGACgaauuCCCCGcCCGggGCCGGCGCa -3'
miRNA:   3'- -UGaGGCUG-----GGGGC-GGCggCGGUCGUG- -5'
30813 3' -65.7 NC_006552.1 + 62291 0.68 0.208218
Target:  5'- cGCUCCG--UCCCGCgGacaCCGUCGGCGCg -3'
miRNA:   3'- -UGAGGCugGGGGCGgC---GGCGGUCGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.