Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30813 | 3' | -65.7 | NC_006552.1 | + | 65062 | 0.66 | 0.258364 |
Target: 5'- --aUCGACCaguaCUGCaacggaaccuggaCGCCGCCGGCGCc -3' miRNA: 3'- ugaGGCUGGg---GGCG-------------GCGGCGGUCGUG- -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 63813 | 0.74 | 0.068325 |
Target: 5'- aGCUUCGGCgCCCaggccaGCCaGCCGCCGGCGg -3' miRNA: 3'- -UGAGGCUG-GGGg-----CGG-CGGCGGUCGUg -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 63736 | 0.71 | 0.117217 |
Target: 5'- uAC-CCGugCCCCGagcaggacaacaugaCCGCCGCCAauauGCGCc -3' miRNA: 3'- -UGaGGCugGGGGC---------------GGCGGCGGU----CGUG- -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 63476 | 0.66 | 0.265205 |
Target: 5'- uGCUU---CCgCUGCCgGCCGCCGGCGCc -3' miRNA: 3'- -UGAGgcuGGgGGCGG-CGGCGGUCGUG- -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 62436 | 0.66 | 0.271551 |
Target: 5'- --cCCGACgugCCCGCCGgCGuuCCGGCGCc -3' miRNA: 3'- ugaGGCUGg--GGGCGGCgGC--GGUCGUG- -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 62291 | 0.68 | 0.208218 |
Target: 5'- cGCUCCG--UCCCGCgGacaCCGUCGGCGCg -3' miRNA: 3'- -UGAGGCugGGGGCGgC---GGCGGUCGUG- -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 60525 | 0.75 | 0.06137 |
Target: 5'- uGCUgCCGAgCCCCGUCuCgGCCAGCACc -3' miRNA: 3'- -UGA-GGCUgGGGGCGGcGgCGGUCGUG- -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 58993 | 0.73 | 0.080198 |
Target: 5'- gAUUCCGACUCuuaCCGCCGgCGCCgAGCAUc -3' miRNA: 3'- -UGAGGCUGGG---GGCGGCgGCGG-UCGUG- -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 58339 | 0.66 | 0.277367 |
Target: 5'- cCUCCuGGCCUCgcgggggcaguuuCGCCGUgGCCAGCcCa -3' miRNA: 3'- uGAGG-CUGGGG-------------GCGGCGgCGGUCGuG- -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 57918 | 0.72 | 0.104472 |
Target: 5'- --cCCGACCCCaaaCGCCGCgGCCaaaccuGGCGCc -3' miRNA: 3'- ugaGGCUGGGG---GCGGCGgCGG------UCGUG- -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 56050 | 0.79 | 0.027165 |
Target: 5'- gGCUCCGACaCCCUGCUGauccacgguCUGCCGGCACa -3' miRNA: 3'- -UGAGGCUG-GGGGCGGC---------GGCGGUCGUG- -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 54924 | 0.69 | 0.158053 |
Target: 5'- cGCUUCGACgaCCUGCUGCaggaGCgGGCACu -3' miRNA: 3'- -UGAGGCUGg-GGGCGGCGg---CGgUCGUG- -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 54522 | 0.66 | 0.25898 |
Target: 5'- cAC-CCGccgcaagcgcACCUUCGCCGCaaucauGCCGGCGCa -3' miRNA: 3'- -UGaGGC----------UGGGGGCGGCGg-----CGGUCGUG- -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 54006 | 0.68 | 0.188551 |
Target: 5'- gGCcCUGGCCCUgGCCgcgaGCCGCCAcCGCg -3' miRNA: 3'- -UGaGGCUGGGGgCGG----CGGCGGUcGUG- -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 53592 | 0.66 | 0.265205 |
Target: 5'- gGCgCCGGCCaguUCGgUGCCGCCGGCu- -3' miRNA: 3'- -UGaGGCUGGg--GGCgGCGGCGGUCGug -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 53124 | 0.66 | 0.291321 |
Target: 5'- cGCUCUGcUCUgCGauGCCGCCGGCAa -3' miRNA: 3'- -UGAGGCuGGGgGCggCGGCGGUCGUg -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 52945 | 0.74 | 0.074034 |
Target: 5'- uGCgCCGGCgCCCGCCGCCGgugCGGCAUc -3' miRNA: 3'- -UGaGGCUGgGGGCGGCGGCg--GUCGUG- -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 52769 | 0.67 | 0.235268 |
Target: 5'- cGCUCCccACCCCCGagcagaUCGCCGCCcaGGCu- -3' miRNA: 3'- -UGAGGc-UGGGGGC------GGCGGCGG--UCGug -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 52317 | 0.66 | 0.252875 |
Target: 5'- gACUagCC-ACCUCgCGCCGgccaCGCCGGCACa -3' miRNA: 3'- -UGA--GGcUGGGG-GCGGCg---GCGGUCGUG- -5' |
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30813 | 3' | -65.7 | NC_006552.1 | + | 45404 | 0.68 | 0.208218 |
Target: 5'- gGCgCCGACgaauuCCCCGcCCGggGCCGGCGCa -3' miRNA: 3'- -UGaGGCUG-----GGGGC-GGCggCGGUCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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