Results 1 - 9 of 9 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30814 | 3' | -49.3 | NC_006552.1 | + | 62976 | 0.66 | 0.964415 |
Target: 5'- -----gGCgCCGuUCUUCUGcCGGCgGACCu -3' miRNA: 3'- cauaaaCG-GGC-AGAAGAC-GUCG-UUGG- -5' |
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30814 | 3' | -49.3 | NC_006552.1 | + | 49174 | 0.73 | 0.685498 |
Target: 5'- ----cUGCCCGca--CUGCGGCGGCCu -3' miRNA: 3'- cauaaACGGGCagaaGACGUCGUUGG- -5' |
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30814 | 3' | -49.3 | NC_006552.1 | + | 45791 | 0.71 | 0.793928 |
Target: 5'- cGUGUccggcUUGUCCGUCagCaGCGGCAACUc -3' miRNA: 3'- -CAUA-----AACGGGCAGaaGaCGUCGUUGG- -5' |
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30814 | 3' | -49.3 | NC_006552.1 | + | 24295 | 0.68 | 0.925729 |
Target: 5'- cGUAgacGCCCcggccaUCgaUCUGUAGCAGCCa -3' miRNA: 3'- -CAUaaaCGGGc-----AGa-AGACGUCGUUGG- -5' |
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30814 | 3' | -49.3 | NC_006552.1 | + | 17547 | 0.66 | 0.971283 |
Target: 5'- -----gGCgCgGUCUUCgGgAGCAGCCu -3' miRNA: 3'- cauaaaCG-GgCAGAAGaCgUCGUUGG- -5' |
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30814 | 3' | -49.3 | NC_006552.1 | + | 9933 | 0.69 | 0.884305 |
Target: 5'- ---cUUGCCgGUCUUUUGCgaauacgcgugGGCGAUCc -3' miRNA: 3'- cauaAACGGgCAGAAGACG-----------UCGUUGG- -5' |
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30814 | 3' | -49.3 | NC_006552.1 | + | 9783 | 0.66 | 0.96798 |
Target: 5'- ----cUGUCCGUggaucaUUUCgUGCAGCAACa -3' miRNA: 3'- cauaaACGGGCA------GAAG-ACGUCGUUGg -5' |
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30814 | 3' | -49.3 | NC_006552.1 | + | 2368 | 0.67 | 0.931022 |
Target: 5'- aGUAUUcUGgCCGUCggUCUGCcucuaacAGCAGCg -3' miRNA: 3'- -CAUAA-ACgGGCAGa-AGACG-------UCGUUGg -5' |
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30814 | 3' | -49.3 | NC_006552.1 | + | 303 | 1.12 | 0.002919 |
Target: 5'- gGUAUUUGCCCGUCUUCUGCAGCAACCc -3' miRNA: 3'- -CAUAAACGGGCAGAAGACGUCGUUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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