miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30814 5' -56 NC_006552.1 + 39350 0.66 0.719044
Target:  5'- --cGUCGCgacggauagGCCG--GCAGCGGUACg -3'
miRNA:   3'- aguUAGCGaa-------CGGCgcUGUCGCCGUG- -5'
30814 5' -56 NC_006552.1 + 30889 0.66 0.708401
Target:  5'- gUCGAUaGCccacUGCUGCuGGCAGCGGUcggGCg -3'
miRNA:   3'- -AGUUAgCGa---ACGGCG-CUGUCGCCG---UG- -5'
30814 5' -56 NC_006552.1 + 26899 0.66 0.686905
Target:  5'- --cGUUGUUgaUGCCG-GcCAGCGGCACc -3'
miRNA:   3'- aguUAGCGA--ACGGCgCuGUCGCCGUG- -5'
30814 5' -56 NC_006552.1 + 26511 0.66 0.676074
Target:  5'- cCGG-CGCcUGCCaccaGCaGCGGCGGCGCc -3'
miRNA:   3'- aGUUaGCGaACGG----CGcUGUCGCCGUG- -5'
30814 5' -56 NC_006552.1 + 57305 0.66 0.665202
Target:  5'- cUCAA-CGa-UGCCGCGcGCAGUGGCcugGCg -3'
miRNA:   3'- -AGUUaGCgaACGGCGC-UGUCGCCG---UG- -5'
30814 5' -56 NC_006552.1 + 56853 0.66 0.665202
Target:  5'- -gGAUUcgGCagcGCCGCGGCgAGCGGCGa -3'
miRNA:   3'- agUUAG--CGaa-CGGCGCUG-UCGCCGUg -5'
30814 5' -56 NC_006552.1 + 13066 0.67 0.654299
Target:  5'- aCAAUCGC-UGCCuucuucucguuGCGGUAGCGGUg- -3'
miRNA:   3'- aGUUAGCGaACGG-----------CGCUGUCGCCGug -5'
30814 5' -56 NC_006552.1 + 51997 0.67 0.643376
Target:  5'- gCGAgaGCUUGCCGCGGC-GCGccaGCAa -3'
miRNA:   3'- aGUUagCGAACGGCGCUGuCGC---CGUg -5'
30814 5' -56 NC_006552.1 + 24995 0.67 0.632443
Target:  5'- gUCAGgcuccUgGCcaGCCGCucGACAGCGGCGg -3'
miRNA:   3'- -AGUU-----AgCGaaCGGCG--CUGUCGCCGUg -5'
30814 5' -56 NC_006552.1 + 15731 0.68 0.59968
Target:  5'- cCGAcgCGCUgcauguaGCCGgcaucCGGCGGUGGCGCg -3'
miRNA:   3'- aGUUa-GCGAa------CGGC-----GCUGUCGCCGUG- -5'
30814 5' -56 NC_006552.1 + 11339 0.68 0.588802
Target:  5'- gUCGAUgGCUUccuCgGUGACGGCGGC-Cg -3'
miRNA:   3'- -AGUUAgCGAAc--GgCGCUGUCGCCGuG- -5'
30814 5' -56 NC_006552.1 + 55472 0.68 0.587716
Target:  5'- gCGAUCGCccUGCUGCaccacagcgaaggGGCGGCGGUgaACg -3'
miRNA:   3'- aGUUAGCGa-ACGGCG-------------CUGUCGCCG--UG- -5'
30814 5' -56 NC_006552.1 + 57445 0.68 0.567161
Target:  5'- gCGAUCGUcgcagacuacuuUUGCgGCGGaGGUGGCGCc -3'
miRNA:   3'- aGUUAGCG------------AACGgCGCUgUCGCCGUG- -5'
30814 5' -56 NC_006552.1 + 26203 0.68 0.567161
Target:  5'- cCAggUGCUUGCCggucggcauggGCGACAgGUGGCGa -3'
miRNA:   3'- aGUuaGCGAACGG-----------CGCUGU-CGCCGUg -5'
30814 5' -56 NC_006552.1 + 8010 0.69 0.524562
Target:  5'- ------aCUUGCCgaagcGCGACAGCGGUGCa -3'
miRNA:   3'- aguuagcGAACGG-----CGCUGUCGCCGUG- -5'
30814 5' -56 NC_006552.1 + 29297 0.69 0.503716
Target:  5'- ---uUCGCgccCCaCGGCGGCGGCGCa -3'
miRNA:   3'- aguuAGCGaacGGcGCUGUCGCCGUG- -5'
30814 5' -56 NC_006552.1 + 33733 0.7 0.453298
Target:  5'- aCGAcaUCGCcaaccGCCagcGCGGCGGCGGCAUu -3'
miRNA:   3'- aGUU--AGCGaa---CGG---CGCUGUCGCCGUG- -5'
30814 5' -56 NC_006552.1 + 33436 0.7 0.441607
Target:  5'- aCGAUCaccuggaGCUUGCCcgccuccGCGACGGCaGCGCc -3'
miRNA:   3'- aGUUAG-------CGAACGG-------CGCUGUCGcCGUG- -5'
30814 5' -56 NC_006552.1 + 10831 0.71 0.424396
Target:  5'- gCGGUUGUUcGCCG-GGCuGCGGCGCu -3'
miRNA:   3'- aGUUAGCGAaCGGCgCUGuCGCCGUG- -5'
30814 5' -56 NC_006552.1 + 19214 0.71 0.405751
Target:  5'- cCGAUCGCUU-CCGUGGaauCAGCcGGCAUg -3'
miRNA:   3'- aGUUAGCGAAcGGCGCU---GUCG-CCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.