Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30814 | 5' | -56 | NC_006552.1 | + | 39350 | 0.66 | 0.719044 |
Target: 5'- --cGUCGCgacggauagGCCG--GCAGCGGUACg -3' miRNA: 3'- aguUAGCGaa-------CGGCgcUGUCGCCGUG- -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 30889 | 0.66 | 0.708401 |
Target: 5'- gUCGAUaGCccacUGCUGCuGGCAGCGGUcggGCg -3' miRNA: 3'- -AGUUAgCGa---ACGGCG-CUGUCGCCG---UG- -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 26899 | 0.66 | 0.686905 |
Target: 5'- --cGUUGUUgaUGCCG-GcCAGCGGCACc -3' miRNA: 3'- aguUAGCGA--ACGGCgCuGUCGCCGUG- -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 26511 | 0.66 | 0.676074 |
Target: 5'- cCGG-CGCcUGCCaccaGCaGCGGCGGCGCc -3' miRNA: 3'- aGUUaGCGaACGG----CGcUGUCGCCGUG- -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 57305 | 0.66 | 0.665202 |
Target: 5'- cUCAA-CGa-UGCCGCGcGCAGUGGCcugGCg -3' miRNA: 3'- -AGUUaGCgaACGGCGC-UGUCGCCG---UG- -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 56853 | 0.66 | 0.665202 |
Target: 5'- -gGAUUcgGCagcGCCGCGGCgAGCGGCGa -3' miRNA: 3'- agUUAG--CGaa-CGGCGCUG-UCGCCGUg -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 13066 | 0.67 | 0.654299 |
Target: 5'- aCAAUCGC-UGCCuucuucucguuGCGGUAGCGGUg- -3' miRNA: 3'- aGUUAGCGaACGG-----------CGCUGUCGCCGug -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 51997 | 0.67 | 0.643376 |
Target: 5'- gCGAgaGCUUGCCGCGGC-GCGccaGCAa -3' miRNA: 3'- aGUUagCGAACGGCGCUGuCGC---CGUg -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 24995 | 0.67 | 0.632443 |
Target: 5'- gUCAGgcuccUgGCcaGCCGCucGACAGCGGCGg -3' miRNA: 3'- -AGUU-----AgCGaaCGGCG--CUGUCGCCGUg -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 15731 | 0.68 | 0.59968 |
Target: 5'- cCGAcgCGCUgcauguaGCCGgcaucCGGCGGUGGCGCg -3' miRNA: 3'- aGUUa-GCGAa------CGGC-----GCUGUCGCCGUG- -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 11339 | 0.68 | 0.588802 |
Target: 5'- gUCGAUgGCUUccuCgGUGACGGCGGC-Cg -3' miRNA: 3'- -AGUUAgCGAAc--GgCGCUGUCGCCGuG- -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 55472 | 0.68 | 0.587716 |
Target: 5'- gCGAUCGCccUGCUGCaccacagcgaaggGGCGGCGGUgaACg -3' miRNA: 3'- aGUUAGCGa-ACGGCG-------------CUGUCGCCG--UG- -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 26203 | 0.68 | 0.567161 |
Target: 5'- cCAggUGCUUGCCggucggcauggGCGACAgGUGGCGa -3' miRNA: 3'- aGUuaGCGAACGG-----------CGCUGU-CGCCGUg -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 57445 | 0.68 | 0.567161 |
Target: 5'- gCGAUCGUcgcagacuacuuUUGCgGCGGaGGUGGCGCc -3' miRNA: 3'- aGUUAGCG------------AACGgCGCUgUCGCCGUG- -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 8010 | 0.69 | 0.524562 |
Target: 5'- ------aCUUGCCgaagcGCGACAGCGGUGCa -3' miRNA: 3'- aguuagcGAACGG-----CGCUGUCGCCGUG- -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 29297 | 0.69 | 0.503716 |
Target: 5'- ---uUCGCgccCCaCGGCGGCGGCGCa -3' miRNA: 3'- aguuAGCGaacGGcGCUGUCGCCGUG- -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 33733 | 0.7 | 0.453298 |
Target: 5'- aCGAcaUCGCcaaccGCCagcGCGGCGGCGGCAUu -3' miRNA: 3'- aGUU--AGCGaa---CGG---CGCUGUCGCCGUG- -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 33436 | 0.7 | 0.441607 |
Target: 5'- aCGAUCaccuggaGCUUGCCcgccuccGCGACGGCaGCGCc -3' miRNA: 3'- aGUUAG-------CGAACGG-------CGCUGUCGcCGUG- -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 10831 | 0.71 | 0.424396 |
Target: 5'- gCGGUUGUUcGCCG-GGCuGCGGCGCu -3' miRNA: 3'- aGUUAGCGAaCGGCgCUGuCGCCGUG- -5' |
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30814 | 5' | -56 | NC_006552.1 | + | 19214 | 0.71 | 0.405751 |
Target: 5'- cCGAUCGCUU-CCGUGGaauCAGCcGGCAUg -3' miRNA: 3'- aGUUAGCGAAcGGCGCU---GUCG-CCGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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