Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30814 | 5' | -56 | NC_006552.1 | + | 26511 | 0.66 | 0.676074 |
Target: 5'- cCGG-CGCcUGCCaccaGCaGCGGCGGCGCc -3' miRNA: 3'- aGUUaGCGaACGG----CGcUGUCGCCGUG- -5' |
|||||||
30814 | 5' | -56 | NC_006552.1 | + | 26899 | 0.66 | 0.686905 |
Target: 5'- --cGUUGUUgaUGCCG-GcCAGCGGCACc -3' miRNA: 3'- aguUAGCGA--ACGGCgCuGUCGCCGUG- -5' |
|||||||
30814 | 5' | -56 | NC_006552.1 | + | 30889 | 0.66 | 0.708401 |
Target: 5'- gUCGAUaGCccacUGCUGCuGGCAGCGGUcggGCg -3' miRNA: 3'- -AGUUAgCGa---ACGGCG-CUGUCGCCG---UG- -5' |
|||||||
30814 | 5' | -56 | NC_006552.1 | + | 39350 | 0.66 | 0.719044 |
Target: 5'- --cGUCGCgacggauagGCCG--GCAGCGGUACg -3' miRNA: 3'- aguUAGCGaa-------CGGCgcUGUCGCCGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home