Results 21 - 24 of 24 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30814 | 5' | -56 | NC_006552.1 | + | 11339 | 0.68 | 0.588802 |
Target: 5'- gUCGAUgGCUUccuCgGUGACGGCGGC-Cg -3' miRNA: 3'- -AGUUAgCGAAc--GgCGCUGUCGCCGuG- -5' |
|||||||
30814 | 5' | -56 | NC_006552.1 | + | 10831 | 0.71 | 0.424396 |
Target: 5'- gCGGUUGUUcGCCG-GGCuGCGGCGCu -3' miRNA: 3'- aGUUAGCGAaCGGCgCUGuCGCCGUG- -5' |
|||||||
30814 | 5' | -56 | NC_006552.1 | + | 8010 | 0.69 | 0.524562 |
Target: 5'- ------aCUUGCCgaagcGCGACAGCGGUGCa -3' miRNA: 3'- aguuagcGAACGG-----CGCUGUCGCCGUG- -5' |
|||||||
30814 | 5' | -56 | NC_006552.1 | + | 340 | 1.1 | 0.00073 |
Target: 5'- cUCAAUCGCUUGCCGCGACAGCGGCACg -3' miRNA: 3'- -AGUUAGCGAACGGCGCUGUCGCCGUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home