miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30815 3' -58.8 NC_006552.1 + 15256 0.66 0.613731
Target:  5'- aGGCGUCGucuGCCGU-CCGc--UGCUGGu -3'
miRNA:   3'- gUCGCAGC---CGGCAuGGCaccACGACC- -5'
30815 3' -58.8 NC_006552.1 + 41508 0.66 0.592712
Target:  5'- uCAGgGUCGGaaaCGgGCUGcaUGGUGCUGc -3'
miRNA:   3'- -GUCgCAGCCg--GCaUGGC--ACCACGACc -5'
30815 3' -58.8 NC_006552.1 + 41414 0.66 0.5812
Target:  5'- gCAGCGcgccaguUCGGCCGcguCCGUGGggaGC-GGc -3'
miRNA:   3'- -GUCGC-------AGCCGGCau-GGCACCa--CGaCC- -5'
30815 3' -58.8 NC_006552.1 + 26725 0.67 0.551098
Target:  5'- aGGCGUC-GCCGUGCaGUGG-GCUu- -3'
miRNA:   3'- gUCGCAGcCGGCAUGgCACCaCGAcc -5'
30815 3' -58.8 NC_006552.1 + 25305 0.67 0.551098
Target:  5'- gCGGUGUCGGUCGgcguccaaGCUGggcgGGUagcGCUGGu -3'
miRNA:   3'- -GUCGCAGCCGGCa-------UGGCa---CCA---CGACC- -5'
30815 3' -58.8 NC_006552.1 + 59609 0.67 0.52149
Target:  5'- aAGCG-CaGGCCGccuggcagaacucggGCCGggaGGUGCUGGc -3'
miRNA:   3'- gUCGCaG-CCGGCa--------------UGGCa--CCACGACC- -5'
30815 3' -58.8 NC_006552.1 + 15508 0.67 0.510419
Target:  5'- -cGCGUCaGCCuUGCCuUGGgccUGCUGGa -3'
miRNA:   3'- guCGCAGcCGGcAUGGcACC---ACGACC- -5'
30815 3' -58.8 NC_006552.1 + 26266 0.68 0.471045
Target:  5'- gUAGCGUCGGCaGgaugACCGUGGccGCg-- -3'
miRNA:   3'- -GUCGCAGCCGgCa---UGGCACCa-CGacc -5'
30815 3' -58.8 NC_006552.1 + 64440 0.69 0.433273
Target:  5'- -cGCccUCGGCCugGCCGUGGUgggGCUGGu -3'
miRNA:   3'- guCGc-AGCCGGcaUGGCACCA---CGACC- -5'
30815 3' -58.8 NC_006552.1 + 38152 0.71 0.331439
Target:  5'- -cGCGUUGaGCUGcugGCCGcgguagcuguUGGUGCUGGg -3'
miRNA:   3'- guCGCAGC-CGGCa--UGGC----------ACCACGACC- -5'
30815 3' -58.8 NC_006552.1 + 19724 0.71 0.331439
Target:  5'- uCGGCGUCGGCCa---CGuUGGcGCUGGc -3'
miRNA:   3'- -GUCGCAGCCGGcaugGC-ACCaCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.