miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30815 5' -54 NC_006552.1 + 63668 0.79 0.217831
Target:  5'- uGGCCAUGAUCAaggACCagGCGcCGACGCa -3'
miRNA:   3'- -CCGGUACUGGUca-UGG--UGCaGCUGCG- -5'
30815 5' -54 NC_006552.1 + 22050 0.76 0.309994
Target:  5'- cGGCC-UGGCCAGUGCUGuCGcUGAUGCg -3'
miRNA:   3'- -CCGGuACUGGUCAUGGU-GCaGCUGCG- -5'
30815 5' -54 NC_006552.1 + 38037 0.76 0.309994
Target:  5'- cGGCCcggAUGGCCuccACCACGUCG-CGCu -3'
miRNA:   3'- -CCGG---UACUGGucaUGGUGCAGCuGCG- -5'
30815 5' -54 NC_006552.1 + 37962 0.76 0.322237
Target:  5'- cGGCCuUGGCCAGggcgucuugcacgGCCugGUCGAucUGCu -3'
miRNA:   3'- -CCGGuACUGGUCa------------UGGugCAGCU--GCG- -5'
30815 5' -54 NC_006552.1 + 8250 0.75 0.374768
Target:  5'- gGGCCAUGGuguCCAG-GCUACGgucgguggCGGCGCg -3'
miRNA:   3'- -CCGGUACU---GGUCaUGGUGCa-------GCUGCG- -5'
30815 5' -54 NC_006552.1 + 2647 0.74 0.40131
Target:  5'- cGGCCcuucugGGCUAGggACCGCG-CGGCGCc -3'
miRNA:   3'- -CCGGua----CUGGUCa-UGGUGCaGCUGCG- -5'
30815 5' -54 NC_006552.1 + 61510 0.74 0.41042
Target:  5'- cGCCcgGGCCgAGUACgGCGUCGAUc- -3'
miRNA:   3'- cCGGuaCUGG-UCAUGgUGCAGCUGcg -5'
30815 5' -54 NC_006552.1 + 14749 0.74 0.41042
Target:  5'- cGGCCuUGAUCuGcGgCAUGUCGGCGCg -3'
miRNA:   3'- -CCGGuACUGGuCaUgGUGCAGCUGCG- -5'
30815 5' -54 NC_006552.1 + 12186 0.74 0.429019
Target:  5'- uGGUgGcGGCCAGUGCCuuGUCGgaccGCGCa -3'
miRNA:   3'- -CCGgUaCUGGUCAUGGugCAGC----UGCG- -5'
30815 5' -54 NC_006552.1 + 64606 0.73 0.438503
Target:  5'- uGGUCAUGGCCcuGGUgcuccagcACCACGguacggcCGACGCu -3'
miRNA:   3'- -CCGGUACUGG--UCA--------UGGUGCa------GCUGCG- -5'
30815 5' -54 NC_006552.1 + 64003 0.72 0.539202
Target:  5'- gGGCC-UGGCCGGcacACCGCuucgUGACGCg -3'
miRNA:   3'- -CCGGuACUGGUCa--UGGUGca--GCUGCG- -5'
30815 5' -54 NC_006552.1 + 42727 0.71 0.54975
Target:  5'- uGCgGUG-CCGGUAcgaacacuCCGCGcUCGACGCg -3'
miRNA:   3'- cCGgUACuGGUCAU--------GGUGC-AGCUGCG- -5'
30815 5' -54 NC_006552.1 + 56165 0.71 0.560361
Target:  5'- aGCCGUGAagCAGgcCC-CGUCGACGa -3'
miRNA:   3'- cCGGUACUg-GUCauGGuGCAGCUGCg -5'
30815 5' -54 NC_006552.1 + 63795 0.71 0.581743
Target:  5'- cGCCAUcACCGGUGCgcuaGCuUCGGCGCc -3'
miRNA:   3'- cCGGUAcUGGUCAUGg---UGcAGCUGCG- -5'
30815 5' -54 NC_006552.1 + 2470 0.7 0.602207
Target:  5'- aGGCuCA--GCCAGUacACCGgcaugcacgaguuCGUCGACGCg -3'
miRNA:   3'- -CCG-GUacUGGUCA--UGGU-------------GCAGCUGCG- -5'
30815 5' -54 NC_006552.1 + 8181 0.7 0.603287
Target:  5'- cGGCCGcGuCCAucACCugGUCG-CGCa -3'
miRNA:   3'- -CCGGUaCuGGUcaUGGugCAGCuGCG- -5'
30815 5' -54 NC_006552.1 + 47897 0.7 0.624926
Target:  5'- cGGCCgcGUGGCggugAGUACCugGUCGuCGa -3'
miRNA:   3'- -CCGG--UACUGg---UCAUGGugCAGCuGCg -5'
30815 5' -54 NC_006552.1 + 52605 0.7 0.63576
Target:  5'- cGGCCAagacGGCC--UGCCGCcgGUCGGCGUg -3'
miRNA:   3'- -CCGGUa---CUGGucAUGGUG--CAGCUGCG- -5'
30815 5' -54 NC_006552.1 + 36180 0.7 0.63576
Target:  5'- cGCCAgcaucGCCGGcacCCGCGUCGGCuGCg -3'
miRNA:   3'- cCGGUac---UGGUCau-GGUGCAGCUG-CG- -5'
30815 5' -54 NC_006552.1 + 26130 0.7 0.640093
Target:  5'- aGGUgGUaGGCCAGgGCCucggagaagcgcagcACGUUGGCGCg -3'
miRNA:   3'- -CCGgUA-CUGGUCaUGG---------------UGCAGCUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.