miRNA display CGI


Results 1 - 20 of 69 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30815 5' -54 NC_006552.1 + 839 0.66 0.863061
Target:  5'- aGGUCAuUGuCCAGUacucugcgcGCCugGUUuGCGCu -3'
miRNA:   3'- -CCGGU-ACuGGUCA---------UGGugCAGcUGCG- -5'
30815 5' -54 NC_006552.1 + 2470 0.7 0.602207
Target:  5'- aGGCuCA--GCCAGUacACCGgcaugcacgaguuCGUCGACGCg -3'
miRNA:   3'- -CCG-GUacUGGUCA--UGGU-------------GCAGCUGCG- -5'
30815 5' -54 NC_006552.1 + 2582 0.69 0.71095
Target:  5'- cGGCCGUGACgAc-GCUACGgcucgaaggCGAUGCg -3'
miRNA:   3'- -CCGGUACUGgUcaUGGUGCa--------GCUGCG- -5'
30815 5' -54 NC_006552.1 + 2647 0.74 0.40131
Target:  5'- cGGCCcuucugGGCUAGggACCGCG-CGGCGCc -3'
miRNA:   3'- -CCGGua----CUGGUCa-UGGUGCaGCUGCG- -5'
30815 5' -54 NC_006552.1 + 4412 0.67 0.79214
Target:  5'- uGGUgAcagGGCCGGUGCCACcaccaucCGGCGUg -3'
miRNA:   3'- -CCGgUa--CUGGUCAUGGUGca-----GCUGCG- -5'
30815 5' -54 NC_006552.1 + 7144 0.67 0.801673
Target:  5'- aGGCCAUcGA-CAGgcgcGCCACGcuguUgGACGCa -3'
miRNA:   3'- -CCGGUA-CUgGUCa---UGGUGC----AgCUGCG- -5'
30815 5' -54 NC_006552.1 + 8119 0.66 0.837991
Target:  5'- cGGCCAUGcAUCAGccaucugcGCCAgGUgGuCGCg -3'
miRNA:   3'- -CCGGUAC-UGGUCa-------UGGUgCAgCuGCG- -5'
30815 5' -54 NC_006552.1 + 8181 0.7 0.603287
Target:  5'- cGGCCGcGuCCAucACCugGUCG-CGCa -3'
miRNA:   3'- -CCGGUaCuGGUcaUGGugCAGCuGCG- -5'
30815 5' -54 NC_006552.1 + 8250 0.75 0.374768
Target:  5'- gGGCCAUGGuguCCAG-GCUACGgucgguggCGGCGCg -3'
miRNA:   3'- -CCGGUACU---GGUCaUGGUGCa-------GCUGCG- -5'
30815 5' -54 NC_006552.1 + 8876 0.66 0.841447
Target:  5'- aGGCCAgaccGACUgaacaaaauguccggGGUACuCGCGUCGAagGUa -3'
miRNA:   3'- -CCGGUa---CUGG---------------UCAUG-GUGCAGCUg-CG- -5'
30815 5' -54 NC_006552.1 + 9378 0.7 0.661729
Target:  5'- uGCC-UGGCCAcUGCCGCGcacgucgccccgugCGGCGCg -3'
miRNA:   3'- cCGGuACUGGUcAUGGUGCa-------------GCUGCG- -5'
30815 5' -54 NC_006552.1 + 10683 0.67 0.786341
Target:  5'- cGCCAcuUGccAUCAGUGCCGCGgugccagccgguaucUCGACGa -3'
miRNA:   3'- cCGGU--AC--UGGUCAUGGUGC---------------AGCUGCg -5'
30815 5' -54 NC_006552.1 + 12186 0.74 0.429019
Target:  5'- uGGUgGcGGCCAGUGCCuuGUCGgaccGCGCa -3'
miRNA:   3'- -CCGgUaCUGGUCAUGGugCAGC----UGCG- -5'
30815 5' -54 NC_006552.1 + 13932 0.68 0.741229
Target:  5'- uGCCAcGACagcgcccgcgucgCGG-GCCACGUCGAUGUa -3'
miRNA:   3'- cCGGUaCUG-------------GUCaUGGUGCAGCUGCG- -5'
30815 5' -54 NC_006552.1 + 14094 0.68 0.731916
Target:  5'- cGGCCGgccgGGCCGcgcuUCAUGUCGcGCGCa -3'
miRNA:   3'- -CCGGUa---CUGGUcau-GGUGCAGC-UGCG- -5'
30815 5' -54 NC_006552.1 + 14749 0.74 0.41042
Target:  5'- cGGCCuUGAUCuGcGgCAUGUCGGCGCg -3'
miRNA:   3'- -CCGGuACUGGuCaUgGUGCAGCUGCG- -5'
30815 5' -54 NC_006552.1 + 18766 0.68 0.742259
Target:  5'- uGGCCuguUGcuGCC-GUGCCGCGUcCGAaCGUg -3'
miRNA:   3'- -CCGGu--AC--UGGuCAUGGUGCA-GCU-GCG- -5'
30815 5' -54 NC_006552.1 + 22050 0.76 0.309994
Target:  5'- cGGCC-UGGCCAGUGCUGuCGcUGAUGCg -3'
miRNA:   3'- -CCGGuACUGGUCAUGGU-GCaGCUGCG- -5'
30815 5' -54 NC_006552.1 + 23023 0.66 0.837991
Target:  5'- uGCCccauCCAGUGCCAgaUGUCGuCGUa -3'
miRNA:   3'- cCGGuacuGGUCAUGGU--GCAGCuGCG- -5'
30815 5' -54 NC_006552.1 + 24566 0.69 0.689684
Target:  5'- aGCCAUGGCaccgcuGUACCAaGUCgGGCGUu -3'
miRNA:   3'- cCGGUACUGgu----CAUGGUgCAG-CUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.