miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30819 5' -57 NC_006552.1 + 27807 0.66 0.703343
Target:  5'- gUCCAcCGUCagcUUGCGCagcuucaaGCUCACGGCUGGc -3'
miRNA:   3'- -AGGU-GCAG---AGCGCG--------UGGGUGUUGGCU- -5'
30819 5' -57 NC_006552.1 + 44619 0.66 0.703343
Target:  5'- gCCAUG---CGCGCGCCCAC--CCGGu -3'
miRNA:   3'- aGGUGCagaGCGCGUGGGUGuuGGCU- -5'
30819 5' -57 NC_006552.1 + 28267 0.66 0.692836
Target:  5'- -aCAgGUCUuUGUGCGCCCACcucggcCCGAu -3'
miRNA:   3'- agGUgCAGA-GCGCGUGGGUGuu----GGCU- -5'
30819 5' -57 NC_006552.1 + 35441 0.66 0.682274
Target:  5'- cUUCGCGUCUUGCgcguucggcuGCugCUGCGACUGc -3'
miRNA:   3'- -AGGUGCAGAGCG----------CGugGGUGUUGGCu -5'
30819 5' -57 NC_006552.1 + 35552 0.66 0.682274
Target:  5'- cUUgGCGaugCUCGCGCGCUCAUauGACgGAc -3'
miRNA:   3'- -AGgUGCa--GAGCGCGUGGGUG--UUGgCU- -5'
30819 5' -57 NC_006552.1 + 10248 0.66 0.671668
Target:  5'- gUCUGCGUgUUGCGCGCCUccaccucucCAGCCa- -3'
miRNA:   3'- -AGGUGCAgAGCGCGUGGGu--------GUUGGcu -5'
30819 5' -57 NC_006552.1 + 61500 0.66 0.671668
Target:  5'- aCUACGU---GCGCGCCCG-GGCCGAg -3'
miRNA:   3'- aGGUGCAgagCGCGUGGGUgUUGGCU- -5'
30819 5' -57 NC_006552.1 + 39771 0.66 0.661026
Target:  5'- gUCCACgGUCagcggCGUGuCGCCCGCAGgUGGc -3'
miRNA:   3'- -AGGUG-CAGa----GCGC-GUGGGUGUUgGCU- -5'
30819 5' -57 NC_006552.1 + 26453 0.67 0.639675
Target:  5'- cUCCugGgggC-CGCGCagccACgCCACAGCCGc -3'
miRNA:   3'- -AGGugCa--GaGCGCG----UG-GGUGUUGGCu -5'
30819 5' -57 NC_006552.1 + 53438 0.67 0.638607
Target:  5'- cCCGCGcacaggUCGCGCuucCCCGCAacaagcuGCCGAc -3'
miRNA:   3'- aGGUGCag----AGCGCGu--GGGUGU-------UGGCU- -5'
30819 5' -57 NC_006552.1 + 25045 0.67 0.618299
Target:  5'- uUCCGCGUCUUcCGCGaa-ACGACCGu -3'
miRNA:   3'- -AGGUGCAGAGcGCGUgggUGUUGGCu -5'
30819 5' -57 NC_006552.1 + 51092 0.67 0.601227
Target:  5'- aCCugGcUUCGCGCACaacucgacgcgaucgCCGCGgcACCGAa -3'
miRNA:   3'- aGGugCaGAGCGCGUG---------------GGUGU--UGGCU- -5'
30819 5' -57 NC_006552.1 + 385 0.68 0.586341
Target:  5'- uUCCcCGUcCUUGCGCACCUu--GCCGc -3'
miRNA:   3'- -AGGuGCA-GAGCGCGUGGGuguUGGCu -5'
30819 5' -57 NC_006552.1 + 61379 0.68 0.565202
Target:  5'- gCCAUGUUUUgGCGCGCCgGCGGCgGc -3'
miRNA:   3'- aGGUGCAGAG-CGCGUGGgUGUUGgCu -5'
30819 5' -57 NC_006552.1 + 62245 0.68 0.553659
Target:  5'- gCCACGgaaUCGCGCGCCUGCuugaaauGugCGGc -3'
miRNA:   3'- aGGUGCag-AGCGCGUGGGUG-------UugGCU- -5'
30819 5' -57 NC_006552.1 + 18543 0.68 0.544268
Target:  5'- gCUACGUCgUCGCcCGuCCCGCGgagaACCGAg -3'
miRNA:   3'- aGGUGCAG-AGCGcGU-GGGUGU----UGGCU- -5'
30819 5' -57 NC_006552.1 + 8183 0.68 0.532861
Target:  5'- gCCGCGUCcaucaccuggUCGCGCAguuccuucacaucCUCGCcGCCGAa -3'
miRNA:   3'- aGGUGCAG----------AGCGCGU-------------GGGUGuUGGCU- -5'
30819 5' -57 NC_006552.1 + 32170 0.69 0.523592
Target:  5'- cUCCACGUCca--GCACCU-CGGCCGAc -3'
miRNA:   3'- -AGGUGCAGagcgCGUGGGuGUUGGCU- -5'
30819 5' -57 NC_006552.1 + 18263 0.69 0.513366
Target:  5'- cUCCAgCG-CUCcgguugGCGCACCaGCAGCCGGc -3'
miRNA:   3'- -AGGU-GCaGAG------CGCGUGGgUGUUGGCU- -5'
30819 5' -57 NC_006552.1 + 19495 0.69 0.493169
Target:  5'- uUCCGaacugCUCGCGCugCCGgAGCCa- -3'
miRNA:   3'- -AGGUgca--GAGCGCGugGGUgUUGGcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.