miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30821 3' -56.9 NC_006552.1 + 13724 0.66 0.664978
Target:  5'- cCUUCuGCCaGGCCACgaauGUGUCgaUGGCGc -3'
miRNA:   3'- -GAAG-CGG-CCGGUGagu-UACAG--GCCGU- -5'
30821 3' -56.9 NC_006552.1 + 50302 0.66 0.664978
Target:  5'- --cCGCCGGgCGCUCAccgaaguUGcgUCGGCAa -3'
miRNA:   3'- gaaGCGGCCgGUGAGUu------ACa-GGCCGU- -5'
30821 3' -56.9 NC_006552.1 + 60341 0.66 0.664978
Target:  5'- --aUGCCGGaCAUUgAGUGgCCGGCGa -3'
miRNA:   3'- gaaGCGGCCgGUGAgUUACaGGCCGU- -5'
30821 3' -56.9 NC_006552.1 + 8246 0.66 0.654206
Target:  5'- --gCGCgGGCCAU--GGUGUCCaGGCu -3'
miRNA:   3'- gaaGCGgCCGGUGagUUACAGG-CCGu -5'
30821 3' -56.9 NC_006552.1 + 48454 0.66 0.632613
Target:  5'- -gUCGuCUGGCuCGCUgGcGUGUCCGGUu -3'
miRNA:   3'- gaAGC-GGCCG-GUGAgU-UACAGGCCGu -5'
30821 3' -56.9 NC_006552.1 + 39523 0.66 0.632613
Target:  5'- aCUUC-CUGGCCGCccacgUCGccGUUCGGCGu -3'
miRNA:   3'- -GAAGcGGCCGGUG-----AGUuaCAGGCCGU- -5'
30821 3' -56.9 NC_006552.1 + 44085 0.67 0.600242
Target:  5'- uCUUCGCCGcCgCGCUCu-UGgCCGGCGc -3'
miRNA:   3'- -GAAGCGGCcG-GUGAGuuACaGGCCGU- -5'
30821 3' -56.9 NC_006552.1 + 19556 0.67 0.600242
Target:  5'- --gCGCCGGCCGCUagcUGagCGGUg -3'
miRNA:   3'- gaaGCGGCCGGUGAguuACagGCCGu -5'
30821 3' -56.9 NC_006552.1 + 43231 0.67 0.589492
Target:  5'- uUUCaGCCGGCCAagcgcuuggaaUCGAUG-CUGGCu -3'
miRNA:   3'- gAAG-CGGCCGGUg----------AGUUACaGGCCGu -5'
30821 3' -56.9 NC_006552.1 + 41544 0.67 0.589492
Target:  5'- -cUCGCCGGCauaguguGCUCAGggucaucggGUaCCGGCu -3'
miRNA:   3'- gaAGCGGCCGg------UGAGUUa--------CA-GGCCGu -5'
30821 3' -56.9 NC_006552.1 + 22121 0.68 0.545865
Target:  5'- gCUUCGUCGGCCACcguggCAccGUCCaccgucaGGCc -3'
miRNA:   3'- -GAAGCGGCCGGUGa----GUuaCAGG-------CCGu -5'
30821 3' -56.9 NC_006552.1 + 10637 0.68 0.536417
Target:  5'- -cUCaCCGGCCACggCGAUG-CUGGCc -3'
miRNA:   3'- gaAGcGGCCGGUGa-GUUACaGGCCGu -5'
30821 3' -56.9 NC_006552.1 + 21645 0.68 0.536417
Target:  5'- aUUCuGCCGGCCACcggcuggcugUCAccGUCCaGCGc -3'
miRNA:   3'- gAAG-CGGCCGGUG----------AGUuaCAGGcCGU- -5'
30821 3' -56.9 NC_006552.1 + 12619 0.68 0.515636
Target:  5'- -gUCGCCGGCCGuagucUGcCCGGCGc -3'
miRNA:   3'- gaAGCGGCCGGUgaguuACaGGCCGU- -5'
30821 3' -56.9 NC_006552.1 + 61677 0.69 0.505367
Target:  5'- --cCGCCgcacggaccuGGCCGCUCGAccacgCCGGCAu -3'
miRNA:   3'- gaaGCGG----------CCGGUGAGUUaca--GGCCGU- -5'
30821 3' -56.9 NC_006552.1 + 32700 0.69 0.495187
Target:  5'- -gUCGCCGGCCGg-CGcgGggCCGGUg -3'
miRNA:   3'- gaAGCGGCCGGUgaGUuaCa-GGCCGu -5'
30821 3' -56.9 NC_006552.1 + 60554 0.69 0.475115
Target:  5'- gUUCGCCGGCgACUCGccG-CaGGCAu -3'
miRNA:   3'- gAAGCGGCCGgUGAGUuaCaGgCCGU- -5'
30821 3' -56.9 NC_006552.1 + 52330 0.7 0.417511
Target:  5'- --gCGCCGGCCACg------CCGGCAc -3'
miRNA:   3'- gaaGCGGCCGGUGaguuacaGGCCGU- -5'
30821 3' -56.9 NC_006552.1 + 20658 0.71 0.402881
Target:  5'- gUUCGCgGGCaCgggcgaacagcgccuGCUCGAUGggcgCCGGCAg -3'
miRNA:   3'- gAAGCGgCCG-G---------------UGAGUUACa---GGCCGU- -5'
30821 3' -56.9 NC_006552.1 + 13950 0.71 0.372894
Target:  5'- -gUCGCgGGCCACgUCGAUGUa-GGCu -3'
miRNA:   3'- gaAGCGgCCGGUG-AGUUACAggCCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.