miRNA display CGI


Results 1 - 20 of 28 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30823 3' -57.2 NC_006552.1 + 5596 0.69 0.452608
Target:  5'- --cGAAGCCGGcCAgGCugACGGUCagcgCGGCa -3'
miRNA:   3'- cuuCUUCGGCCuGU-CG--UGCCAG----GCCG- -5'
30823 3' -57.2 NC_006552.1 + 10789 0.67 0.57483
Target:  5'- --uGgcGCC-GACGGCAuUGcGUCCGGCg -3'
miRNA:   3'- cuuCuuCGGcCUGUCGU-GC-CAGGCCG- -5'
30823 3' -57.2 NC_006552.1 + 11746 0.67 0.617549
Target:  5'- --uGAGGCCGGAgCGGCGaaUGGcacgCuCGGCa -3'
miRNA:   3'- cuuCUUCGGCCU-GUCGU--GCCa---G-GCCG- -5'
30823 3' -57.2 NC_006552.1 + 12216 0.68 0.553707
Target:  5'- -cAGAGGCCu--CAGCGCGGg-CGGCc -3'
miRNA:   3'- cuUCUUCGGccuGUCGUGCCagGCCG- -5'
30823 3' -57.2 NC_006552.1 + 13281 0.67 0.585462
Target:  5'- --cGAAucGCUGGGCuGCGCGGgaUCgGGCu -3'
miRNA:   3'- cuuCUU--CGGCCUGuCGUGCC--AGgCCG- -5'
30823 3' -57.2 NC_006552.1 + 13333 0.66 0.649744
Target:  5'- --uGggGCCGGGCuGCAUcc-UCGGCa -3'
miRNA:   3'- cuuCuuCGGCCUGuCGUGccaGGCCG- -5'
30823 3' -57.2 NC_006552.1 + 15591 0.66 0.639015
Target:  5'- gGgcGAAGCCGcg-AGCACGGg-CGGCu -3'
miRNA:   3'- -CuuCUUCGGCcugUCGUGCCagGCCG- -5'
30823 3' -57.2 NC_006552.1 + 17594 0.67 0.57483
Target:  5'- --cGAugcGCUGGGCGGCGCGgGUuuGGa -3'
miRNA:   3'- cuuCUu--CGGCCUGUCGUGC-CAggCCg -5'
30823 3' -57.2 NC_006552.1 + 20790 0.68 0.522482
Target:  5'- uGAAGAcGuuGGGCAccgugaucccGCuCGcGUCCGGCg -3'
miRNA:   3'- -CUUCUuCggCCUGU----------CGuGC-CAGGCCG- -5'
30823 3' -57.2 NC_006552.1 + 20853 0.66 0.656175
Target:  5'- cGggGAacacgaauuccggcAGUCGGAucuguucCAGCGCuuccauGUCCGGCa -3'
miRNA:   3'- -CuuCU--------------UCGGCCU-------GUCGUGc-----CAGGCCG- -5'
30823 3' -57.2 NC_006552.1 + 25790 0.68 0.512223
Target:  5'- -cAGAGGuaCCGGcACGGC-CGGUgaugCCGGCg -3'
miRNA:   3'- cuUCUUC--GGCC-UGUCGuGCCA----GGCCG- -5'
30823 3' -57.2 NC_006552.1 + 31876 0.68 0.550557
Target:  5'- cGAAGuAAGCCgugaaagcggcuucGGccagcGCGGCGCGGUUCGGa -3'
miRNA:   3'- -CUUC-UUCGG--------------CC-----UGUCGUGCCAGGCCg -5'
30823 3' -57.2 NC_006552.1 + 31975 0.66 0.649744
Target:  5'- -cAGAuGCCGGugGuGCuCGGcgugaaucUCCGGCu -3'
miRNA:   3'- cuUCUuCGGCCugU-CGuGCC--------AGGCCG- -5'
30823 3' -57.2 NC_006552.1 + 32699 0.74 0.227809
Target:  5'- --cGucGCCGGcCGGCGCGGggCCGGUg -3'
miRNA:   3'- cuuCuuCGGCCuGUCGUGCCa-GGCCG- -5'
30823 3' -57.2 NC_006552.1 + 33365 0.67 0.57483
Target:  5'- -cAGAAG--GGcCAGCACGGgCCGGCc -3'
miRNA:   3'- cuUCUUCggCCuGUCGUGCCaGGCCG- -5'
30823 3' -57.2 NC_006552.1 + 35386 0.7 0.42425
Target:  5'- aGAGAcuGGCCGG-CGGUuCGGUCUuGGCu -3'
miRNA:   3'- cUUCU--UCGGCCuGUCGuGCCAGG-CCG- -5'
30823 3' -57.2 NC_006552.1 + 38091 0.69 0.462289
Target:  5'- cGAGGAacGGCaGGACAGCAgccUGGUacugCGGCg -3'
miRNA:   3'- -CUUCU--UCGgCCUGUCGU---GCCAg---GCCG- -5'
30823 3' -57.2 NC_006552.1 + 38386 0.68 0.521453
Target:  5'- -cAGGGuCCGGcCGGCGCGGaaguuguccaugaUCCGGCc -3'
miRNA:   3'- cuUCUUcGGCCuGUCGUGCC-------------AGGCCG- -5'
30823 3' -57.2 NC_006552.1 + 41401 0.7 0.39698
Target:  5'- cAGGGucAGCCaGGCAGCGCGccaGUUCGGCc -3'
miRNA:   3'- cUUCU--UCGGcCUGUCGUGC---CAGGCCG- -5'
30823 3' -57.2 NC_006552.1 + 45367 0.71 0.354117
Target:  5'- ----cGGCCGGuaucugGCAGCGCGGcCCGGg -3'
miRNA:   3'- cuucuUCGGCC------UGUCGUGCCaGGCCg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.