Results 1 - 20 of 28 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 45425 | 0.66 | 0.681799 |
Target: 5'- --cGggGCCGGcGCAGC-CuccCCGGCa -3' miRNA: 3'- cuuCuuCGGCC-UGUCGuGccaGGCCG- -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 61648 | 0.68 | 0.547414 |
Target: 5'- cGAGGccgccGGCCGGACGuccaaccuggccgccGCACGGaCCuGGCc -3' miRNA: 3'- -CUUCu----UCGGCCUGU---------------CGUGCCaGG-CCG- -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 31876 | 0.68 | 0.550557 |
Target: 5'- cGAAGuAAGCCgugaaagcggcuucGGccagcGCGGCGCGGUUCGGa -3' miRNA: 3'- -CUUC-UUCGG--------------CC-----UGUCGUGCCAGGCCg -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 12216 | 0.68 | 0.553707 |
Target: 5'- -cAGAGGCCu--CAGCGCGGg-CGGCc -3' miRNA: 3'- cuUCUUCGGccuGUCGUGCCagGCCG- -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 10789 | 0.67 | 0.57483 |
Target: 5'- --uGgcGCC-GACGGCAuUGcGUCCGGCg -3' miRNA: 3'- cuuCuuCGGcCUGUCGU-GC-CAGGCCG- -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 17594 | 0.67 | 0.57483 |
Target: 5'- --cGAugcGCUGGGCGGCGCGgGUuuGGa -3' miRNA: 3'- cuuCUu--CGGCCUGUCGUGC-CAggCCg -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 33365 | 0.67 | 0.57483 |
Target: 5'- -cAGAAG--GGcCAGCACGGgCCGGCc -3' miRNA: 3'- cuUCUUCggCCuGUCGUGCCaGGCCG- -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 13281 | 0.67 | 0.585462 |
Target: 5'- --cGAAucGCUGGGCuGCGCGGgaUCgGGCu -3' miRNA: 3'- cuuCUU--CGGCCUGuCGUGCC--AGgCCG- -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 53591 | 0.67 | 0.596131 |
Target: 5'- --uGgcGCCGGcCAGUuCGGUgccgCCGGCu -3' miRNA: 3'- cuuCuuCGGCCuGUCGuGCCA----GGCCG- -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 20790 | 0.68 | 0.522482 |
Target: 5'- uGAAGAcGuuGGGCAccgugaucccGCuCGcGUCCGGCg -3' miRNA: 3'- -CUUCUuCggCCUGU----------CGuGC-CAGGCCG- -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 38386 | 0.68 | 0.521453 |
Target: 5'- -cAGGGuCCGGcCGGCGCGGaaguuguccaugaUCCGGCc -3' miRNA: 3'- cuUCUUcGGCCuGUCGUGCC-------------AGGCCG- -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 25790 | 0.68 | 0.512223 |
Target: 5'- -cAGAGGuaCCGGcACGGC-CGGUgaugCCGGCg -3' miRNA: 3'- cuUCUUC--GGCC-UGUCGuGCCA----GGCCG- -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 61369 | 0.73 | 0.271751 |
Target: 5'- -cGGGAGCCGGGCcauguuuuGGCGCG--CCGGCg -3' miRNA: 3'- cuUCUUCGGCCUG--------UCGUGCcaGGCCG- -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 59921 | 0.72 | 0.337911 |
Target: 5'- cAAGGcgcGCCGGACcGUGCuGUCCGGCu -3' miRNA: 3'- cUUCUu--CGGCCUGuCGUGcCAGGCCG- -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 45367 | 0.71 | 0.354117 |
Target: 5'- ----cGGCCGGuaucugGCAGCGCGGcCCGGg -3' miRNA: 3'- cuucuUCGGCC------UGUCGUGCCaGGCCg -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 41401 | 0.7 | 0.39698 |
Target: 5'- cAGGGucAGCCaGGCAGCGCGccaGUUCGGCc -3' miRNA: 3'- cUUCU--UCGGcCUGUCGUGC---CAGGCCG- -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 35386 | 0.7 | 0.42425 |
Target: 5'- aGAGAcuGGCCGG-CGGUuCGGUCUuGGCu -3' miRNA: 3'- cUUCU--UCGGCCuGUCGuGCCAGG-CCG- -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 5596 | 0.69 | 0.452608 |
Target: 5'- --cGAAGCCGGcCAgGCugACGGUCagcgCGGCa -3' miRNA: 3'- cuuCUUCGGCCuGU-CG--UGCCAG----GCCG- -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 38091 | 0.69 | 0.462289 |
Target: 5'- cGAGGAacGGCaGGACAGCAgccUGGUacugCGGCg -3' miRNA: 3'- -CUUCU--UCGgCCUGUCGU---GCCAg---GCCG- -5' |
|||||||
30823 | 3' | -57.2 | NC_006552.1 | + | 61270 | 0.69 | 0.48197 |
Target: 5'- aGGGAAGCUGGGCcGCAaacccaugGGUCUGGg -3' miRNA: 3'- cUUCUUCGGCCUGuCGUg-------CCAGGCCg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home