miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30824 5' -53.8 NC_006552.1 + 38834 0.66 0.811562
Target:  5'- aAGAaCGGcacgUAGgGGAAGuGCCGGUGCGu -3'
miRNA:   3'- aUCUgGCC----AUCgUCUUU-CGGCUACGC- -5'
30824 5' -53.8 NC_006552.1 + 7619 0.66 0.782233
Target:  5'- cAGACCGGcGGCGGuuuGCCGc-GCa -3'
miRNA:   3'- aUCUGGCCaUCGUCuuuCGGCuaCGc -5'
30824 5' -53.8 NC_006552.1 + 27363 0.66 0.782233
Target:  5'- cGGGCCaGGagccGGCAGAccagcAGGCCGAacuguuUGCGg -3'
miRNA:   3'- aUCUGG-CCa---UCGUCU-----UUCGGCU------ACGC- -5'
30824 5' -53.8 NC_006552.1 + 59614 0.67 0.772124
Target:  5'- cAGGCCGccUGGCAGAAcucgGGCCGGgagGUGc -3'
miRNA:   3'- aUCUGGCc-AUCGUCUU----UCGGCUa--CGC- -5'
30824 5' -53.8 NC_006552.1 + 49938 0.67 0.761867
Target:  5'- cGGGCCGGccgagacGCAGcuAGCCGcUGUGa -3'
miRNA:   3'- aUCUGGCCau-----CGUCuuUCGGCuACGC- -5'
30824 5' -53.8 NC_006552.1 + 4355 0.67 0.751474
Target:  5'- -cGGCCGucAGCAGAGAuuuGCCGAUGaCa -3'
miRNA:   3'- auCUGGCcaUCGUCUUU---CGGCUAC-Gc -5'
30824 5' -53.8 NC_006552.1 + 29668 0.68 0.7196
Target:  5'- gUAG-CCGGggucaacAGUAGAGAagucgagauccGCCGAUGCGu -3'
miRNA:   3'- -AUCuGGCCa------UCGUCUUU-----------CGGCUACGC- -5'
30824 5' -53.8 NC_006552.1 + 58647 0.68 0.708783
Target:  5'- -cGACCGG--GCGacGAGCCGAUGUa -3'
miRNA:   3'- auCUGGCCauCGUcuUUCGGCUACGc -5'
30824 5' -53.8 NC_006552.1 + 31280 0.68 0.675918
Target:  5'- cAGGCCGGUAGCcGu--GUCGAUGa- -3'
miRNA:   3'- aUCUGGCCAUCGuCuuuCGGCUACgc -5'
30824 5' -53.8 NC_006552.1 + 25293 0.7 0.598248
Target:  5'- aUGGACCgGGUAGCGGu--GUCGGUcgGCGu -3'
miRNA:   3'- -AUCUGG-CCAUCGUCuuuCGGCUA--CGC- -5'
30824 5' -53.8 NC_006552.1 + 4704 0.7 0.554289
Target:  5'- gAGAauuuucuuCCGGUAGUAGcccguAGGCCGAgGCGg -3'
miRNA:   3'- aUCU--------GGCCAUCGUCu----UUCGGCUaCGC- -5'
30824 5' -53.8 NC_006552.1 + 2759 0.71 0.490372
Target:  5'- cAGGCUGGUucgAGUGGguGGCCGAggGCGg -3'
miRNA:   3'- aUCUGGCCA---UCGUCuuUCGGCUa-CGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.