miRNA display CGI


Results 1 - 16 of 16 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30851 5' -51.7 NC_006552.1 + 49061 0.66 0.939193
Target:  5'- --aUGAu--CGACCCacgagcGAACAGCCUGGa -3'
miRNA:   3'- ccaGCUcauGCUGGG------CUUGUUGGACC- -5'
30851 5' -51.7 NC_006552.1 + 64466 0.66 0.926871
Target:  5'- uGGUgGAG-ACauuCCCGAucauccgcacgcugGCGGCCUGGc -3'
miRNA:   3'- -CCAgCUCaUGcu-GGGCU--------------UGUUGGACC- -5'
30851 5' -51.7 NC_006552.1 + 51036 0.67 0.916841
Target:  5'- uGGcCGAugccgGCGAuCCCGAGaCAGCCcUGGa -3'
miRNA:   3'- -CCaGCUca---UGCU-GGGCUU-GUUGG-ACC- -5'
30851 5' -51.7 NC_006552.1 + 38027 0.67 0.910577
Target:  5'- uGUUGAucaACGGCCCGGAUGGCCUc- -3'
miRNA:   3'- cCAGCUca-UGCUGGGCUUGUUGGAcc -5'
30851 5' -51.7 NC_006552.1 + 59033 0.67 0.897246
Target:  5'- -aUCGAGUACaagcugucACCCGAACAcgaGgCUGGc -3'
miRNA:   3'- ccAGCUCAUGc-------UGGGCUUGU---UgGACC- -5'
30851 5' -51.7 NC_006552.1 + 4904 0.68 0.890185
Target:  5'- uGGUCGGcaGCGGCCUuauuGAGCGcuGCCUGu -3'
miRNA:   3'- -CCAGCUcaUGCUGGG----CUUGU--UGGACc -5'
30851 5' -51.7 NC_006552.1 + 50229 0.68 0.890185
Target:  5'- -aUCGAG-GCGGCCCGAagcGCAAUCg-- -3'
miRNA:   3'- ccAGCUCaUGCUGGGCU---UGUUGGacc -5'
30851 5' -51.7 NC_006552.1 + 8270 0.68 0.885825
Target:  5'- cGGUCGGugGCGGCgCGGaacucgcgguacagcGCGACCUGa -3'
miRNA:   3'- -CCAGCUcaUGCUGgGCU---------------UGUUGGACc -5'
30851 5' -51.7 NC_006552.1 + 44435 0.68 0.875297
Target:  5'- cGGcUCGAGUACGugCuguuCGAGCAGCaaCUGc -3'
miRNA:   3'- -CC-AGCUCAUGCugG----GCUUGUUG--GACc -5'
30851 5' -51.7 NC_006552.1 + 41843 0.68 0.867481
Target:  5'- ---aGGGUGCGGCUCG-GCAuuggggucgaaGCCUGGg -3'
miRNA:   3'- ccagCUCAUGCUGGGCuUGU-----------UGGACC- -5'
30851 5' -51.7 NC_006552.1 + 64664 0.68 0.859424
Target:  5'- cGGUCagcuucgcgacaGAGUAUGugCCGAGC-ACC-GGc -3'
miRNA:   3'- -CCAG------------CUCAUGCugGGCUUGuUGGaCC- -5'
30851 5' -51.7 NC_006552.1 + 53168 0.68 0.859424
Target:  5'- aGG-CGAucGUGCGACCC-AACGGCUgGGa -3'
miRNA:   3'- -CCaGCU--CAUGCUGGGcUUGUUGGaCC- -5'
30851 5' -51.7 NC_006552.1 + 7107 0.7 0.757352
Target:  5'- cGGUUGAucugcucUGCGGCgCCGAACAACUUGc -3'
miRNA:   3'- -CCAGCUc------AUGCUG-GGCUUGUUGGACc -5'
30851 5' -51.7 NC_006552.1 + 35137 0.74 0.564227
Target:  5'- gGGUCGAGuUGCGGCCCuggcagagcgcGAACAagccggcgGCCUGu -3'
miRNA:   3'- -CCAGCUC-AUGCUGGG-----------CUUGU--------UGGACc -5'
30851 5' -51.7 NC_006552.1 + 61515 0.75 0.50108
Target:  5'- gGGcCGAGUACGGCgUCGAucaccAgGACCUGGa -3'
miRNA:   3'- -CCaGCUCAUGCUG-GGCU-----UgUUGGACC- -5'
30851 5' -51.7 NC_006552.1 + 52219 0.77 0.422202
Target:  5'- cGUCGAccagcCGGCCCuGGACAACCUGGc -3'
miRNA:   3'- cCAGCUcau--GCUGGG-CUUGUUGGACC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.