miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30853 3' -55.2 NC_006552.1 + 63804 0.66 0.772598
Target:  5'- -cGGUGCGcuaGCUucgGCGCCCaGGCCaGCCa -3'
miRNA:   3'- cuUCGCGC---UGA---UGUGGGaCUGGcUGG- -5'
30853 3' -55.2 NC_006552.1 + 63134 0.67 0.700349
Target:  5'- cGAGCGCGGCgaACACCCgcacACCGcggagcaggcgaACCu -3'
miRNA:   3'- cUUCGCGCUGa-UGUGGGac--UGGC------------UGG- -5'
30853 3' -55.2 NC_006552.1 + 62564 0.7 0.518321
Target:  5'- -cAGCGCGACgaacuggACACgauCCUGGCuCGACa -3'
miRNA:   3'- cuUCGCGCUGa------UGUG---GGACUG-GCUGg -5'
30853 3' -55.2 NC_006552.1 + 61722 0.77 0.217831
Target:  5'- --cGCGCGGgUacGCGCCCUGGCCGAaguCCu -3'
miRNA:   3'- cuuCGCGCUgA--UGUGGGACUGGCU---GG- -5'
30853 3' -55.2 NC_006552.1 + 59483 0.66 0.782444
Target:  5'- uGAGGCGCcACUucgGCGCUCUcACCuGCCg -3'
miRNA:   3'- -CUUCGCGcUGA---UGUGGGAcUGGcUGG- -5'
30853 3' -55.2 NC_006552.1 + 56036 0.67 0.731916
Target:  5'- uGGAGUuCGACUcaggcuccgACACCCUG-CUGAUCc -3'
miRNA:   3'- -CUUCGcGCUGA---------UGUGGGACuGGCUGG- -5'
30853 3' -55.2 NC_006552.1 + 55155 0.78 0.181201
Target:  5'- aGAAGCcCGACgGCACCCcGACCGugCu -3'
miRNA:   3'- -CUUCGcGCUGaUGUGGGaCUGGCugG- -5'
30853 3' -55.2 NC_006552.1 + 54740 0.74 0.341271
Target:  5'- --uGUGCGACgGCGCCCUGcuccgcgacACCGACg -3'
miRNA:   3'- cuuCGCGCUGaUGUGGGAC---------UGGCUGg -5'
30853 3' -55.2 NC_006552.1 + 54623 0.69 0.613017
Target:  5'- --uGCGCGAa---GCCCUGGgcucucuccccguCCGACCg -3'
miRNA:   3'- cuuCGCGCUgaugUGGGACU-------------GGCUGG- -5'
30853 3' -55.2 NC_006552.1 + 54255 0.67 0.742259
Target:  5'- -cAGCGCGccCUGCGCCUcccaggaguUGACC-ACCu -3'
miRNA:   3'- cuUCGCGCu-GAUGUGGG---------ACUGGcUGG- -5'
30853 3' -55.2 NC_006552.1 + 53997 0.72 0.438503
Target:  5'- cAGGCGCGug-GCccugGCCCUGGCCGcgaGCCg -3'
miRNA:   3'- cUUCGCGCugaUG----UGGGACUGGC---UGG- -5'
30853 3' -55.2 NC_006552.1 + 51710 0.66 0.79214
Target:  5'- cAAGaccaGCGACgagAUugCCgcgaUGAUCGACCg -3'
miRNA:   3'- cUUCg---CGCUGa--UGugGG----ACUGGCUGG- -5'
30853 3' -55.2 NC_006552.1 + 50280 0.67 0.731916
Target:  5'- uGAAGCcaaauGCGACUgGCGCCC--GCCGGgCg -3'
miRNA:   3'- -CUUCG-----CGCUGA-UGUGGGacUGGCUgG- -5'
30853 3' -55.2 NC_006552.1 + 50161 0.69 0.624926
Target:  5'- uGGAGCagGCGuACUGCGCgCUGGUCGGCUa -3'
miRNA:   3'- -CUUCG--CGC-UGAUGUGgGACUGGCUGG- -5'
30853 3' -55.2 NC_006552.1 + 45403 0.67 0.721476
Target:  5'- -cGGCGcCGACgaauucccCGCCCggGGCCGGCg -3'
miRNA:   3'- cuUCGC-GCUGau------GUGGGa-CUGGCUGg -5'
30853 3' -55.2 NC_006552.1 + 44563 0.67 0.689684
Target:  5'- cGGGCaGCGcCUGCugCCUGGCaCGAgUg -3'
miRNA:   3'- cUUCG-CGCuGAUGugGGACUG-GCUgG- -5'
30853 3' -55.2 NC_006552.1 + 44073 0.66 0.779506
Target:  5'- -cGGCGCG-CUuccucuucgccgccGCGCuCUUGGCCGGCg -3'
miRNA:   3'- cuUCGCGCuGA--------------UGUG-GGACUGGCUGg -5'
30853 3' -55.2 NC_006552.1 + 43741 0.72 0.41042
Target:  5'- cGAGGCGCGACacGCGCCCcaGcCCGcCCa -3'
miRNA:   3'- -CUUCGCGCUGa-UGUGGGa-CuGGCuGG- -5'
30853 3' -55.2 NC_006552.1 + 39511 0.71 0.48763
Target:  5'- aGAGCGuCGGCaACuuCCUGGCCGcCCa -3'
miRNA:   3'- cUUCGC-GCUGaUGugGGACUGGCuGG- -5'
30853 3' -55.2 NC_006552.1 + 37805 0.67 0.689684
Target:  5'- -cGGCGCGAucauuggcauCUGCGCgaUCUGggcGCCGGCCu -3'
miRNA:   3'- cuUCGCGCU----------GAUGUG--GGAC---UGGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.