Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30857 | 3' | -61.9 | NC_006552.1 | + | 44186 | 0.74 | 0.131774 |
Target: 5'- gCGCCGacgguccaugucuucGCGCUcgUGGCgcaGGUGGCGAUCa -3' miRNA: 3'- -GCGGC---------------CGCGAa-GCCGa--CCACCGCUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 36403 | 0.74 | 0.137404 |
Target: 5'- uCGCCGGCGCUcggagacgccUUGGCUuG-GGCGGCa -3' miRNA: 3'- -GCGGCCGCGA----------AGCCGAcCaCCGCUGg -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 35393 | 0.72 | 0.182431 |
Target: 5'- gGCCGGCGgUUCGGUcuUGGcuuuguugaUGGCaGCCu -3' miRNA: 3'- gCGGCCGCgAAGCCG--ACC---------ACCGcUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 26110 | 0.71 | 0.228531 |
Target: 5'- aGCCGuaGCGCUcaUCGuGCaGGUGGUaGGCCa -3' miRNA: 3'- gCGGC--CGCGA--AGC-CGaCCACCG-CUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 15213 | 0.7 | 0.252009 |
Target: 5'- uGCCGGuCGCcuugCGGUUGGUGuccacGCuGACCu -3' miRNA: 3'- gCGGCC-GCGaa--GCCGACCAC-----CG-CUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 61193 | 0.7 | 0.25818 |
Target: 5'- aGCCuGCGCcgauaUCGGCUGcuggGGCGACa -3' miRNA: 3'- gCGGcCGCGa----AGCCGACca--CCGCUGg -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 8241 | 0.7 | 0.260056 |
Target: 5'- uGUCGGCGCgggccaugguguccaGGCUacggucGGUGGCGGCg -3' miRNA: 3'- gCGGCCGCGaag------------CCGA------CCACCGCUGg -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 11057 | 0.7 | 0.264475 |
Target: 5'- cCGCCGG-GCUUCagcaGGCUGuaGGCGugCu -3' miRNA: 3'- -GCGGCCgCGAAG----CCGACcaCCGCugG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 59401 | 0.69 | 0.270893 |
Target: 5'- gGCgCGGCaGCgUCaGGC-GGUGGCGGCg -3' miRNA: 3'- gCG-GCCG-CGaAG-CCGaCCACCGCUGg -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 12155 | 0.69 | 0.2909 |
Target: 5'- cCGCCcucgauGGCa--UCGGCcagguuguucaUGGUGGCGGCCa -3' miRNA: 3'- -GCGG------CCGcgaAGCCG-----------ACCACCGCUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 2733 | 0.68 | 0.318612 |
Target: 5'- gCGCCaucgcGCGCUUUgccccguuucaGGCUGGUucgagugGGUGGCCg -3' miRNA: 3'- -GCGGc----CGCGAAG-----------CCGACCA-------CCGCUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 32706 | 0.68 | 0.319348 |
Target: 5'- gGCCGGCGCgg-GGCcGGUGGagcGCUc -3' miRNA: 3'- gCGGCCGCGaagCCGaCCACCgc-UGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 38855 | 0.68 | 0.334337 |
Target: 5'- uGCCGGUGCguguaCGGC--GUGG-GACCa -3' miRNA: 3'- gCGGCCGCGaa---GCCGacCACCgCUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 26212 | 0.68 | 0.342022 |
Target: 5'- uGCCGGUcgGCaUgGGCgacaGGUGGCGAa- -3' miRNA: 3'- gCGGCCG--CGaAgCCGa---CCACCGCUgg -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 54554 | 0.68 | 0.342022 |
Target: 5'- uGCCGGCGCaa-GGCc--UGGUGAUCg -3' miRNA: 3'- gCGGCCGCGaagCCGaccACCGCUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 53593 | 0.68 | 0.342022 |
Target: 5'- gCGCCGGCcaguucgguGCcgcCGGCUgaGGUGGaGGCCu -3' miRNA: 3'- -GCGGCCG---------CGaa-GCCGA--CCACCgCUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 61373 | 0.68 | 0.349834 |
Target: 5'- aGCCGGgccaUGUUUUGGCgcgccGGcGGCGGCUa -3' miRNA: 3'- gCGGCC----GCGAAGCCGa----CCaCCGCUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 52946 | 0.67 | 0.362595 |
Target: 5'- gCGCCGGCGCccgccgccggugCGGCauccgGGUGcGCGuuCa -3' miRNA: 3'- -GCGGCCGCGaa----------GCCGa----CCAC-CGCugG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 26754 | 0.67 | 0.365835 |
Target: 5'- aGuuGGCGgaaCGGCUGGUccGUGACCu -3' miRNA: 3'- gCggCCGCgaaGCCGACCAc-CGCUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 7716 | 0.67 | 0.365835 |
Target: 5'- aGCCGGCGCauugcgcugCGGUUGGUcuuugucaGGCG-Ca -3' miRNA: 3'- gCGGCCGCGaa-------GCCGACCA--------CCGCuGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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