Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30857 | 3' | -61.9 | NC_006552.1 | + | 1927 | 0.66 | 0.434704 |
Target: 5'- aCGgCGGCGUcguugUCGGgaGuGUGGaCGACg -3' miRNA: 3'- -GCgGCCGCGa----AGCCgaC-CACC-GCUGg -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 2041 | 0.67 | 0.389919 |
Target: 5'- gCGCCugggacaGGCGCUUgagcgcgcCGGCgucGUGcGCGGCCu -3' miRNA: 3'- -GCGG-------CCGCGAA--------GCCGac-CAC-CGCUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 2733 | 0.68 | 0.318612 |
Target: 5'- gCGCCaucgcGCGCUUUgccccguuucaGGCUGGUucgagugGGUGGCCg -3' miRNA: 3'- -GCGGc----CGCGAAG-----------CCGACCA-------CCGCUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 7716 | 0.67 | 0.365835 |
Target: 5'- aGCCGGCGCauugcgcugCGGUUGGUcuuugucaGGCG-Ca -3' miRNA: 3'- gCGGCCGCGaa-------GCCGACCA--------CCGCuGg -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 8241 | 0.7 | 0.260056 |
Target: 5'- uGUCGGCGCgggccaugguguccaGGCUacggucGGUGGCGGCg -3' miRNA: 3'- gCGGCCGCGaag------------CCGA------CCACCGCUGg -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 11057 | 0.7 | 0.264475 |
Target: 5'- cCGCCGG-GCUUCagcaGGCUGuaGGCGugCu -3' miRNA: 3'- -GCGGCCgCGAAG----CCGACcaCCGCugG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 11331 | 0.66 | 0.425688 |
Target: 5'- uCGgCGGCGUcgaUGGCUuccucGGUgacGGCGGCCg -3' miRNA: 3'- -GCgGCCGCGaa-GCCGA-----CCA---CCGCUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 12155 | 0.69 | 0.2909 |
Target: 5'- cCGCCcucgauGGCa--UCGGCcagguuguucaUGGUGGCGGCCa -3' miRNA: 3'- -GCGG------CCGcgaAGCCG-----------ACCACCGCUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 15213 | 0.7 | 0.252009 |
Target: 5'- uGCCGGuCGCcuugCGGUUGGUGuccacGCuGACCu -3' miRNA: 3'- gCGGCC-GCGaa--GCCGACCAC-----CG-CUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 15747 | 0.66 | 0.443831 |
Target: 5'- aGCCGGCauc-CGGC-GGUGGCGcgaGCUu -3' miRNA: 3'- gCGGCCGcgaaGCCGaCCACCGC---UGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 26110 | 0.71 | 0.228531 |
Target: 5'- aGCCGuaGCGCUcaUCGuGCaGGUGGUaGGCCa -3' miRNA: 3'- gCGGC--CGCGA--AGC-CGaCCACCG-CUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 26212 | 0.68 | 0.342022 |
Target: 5'- uGCCGGUcgGCaUgGGCgacaGGUGGCGAa- -3' miRNA: 3'- gCGGCCG--CGaAgCCGa---CCACCGCUgg -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 26754 | 0.67 | 0.365835 |
Target: 5'- aGuuGGCGgaaCGGCUGGUccGUGACCu -3' miRNA: 3'- gCggCCGCgaaGCCGACCAc-CGCUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 28612 | 0.67 | 0.407122 |
Target: 5'- uCGgCGGCGgUUcgaugccuuccagCGGCaGGUaacGGCGGCCg -3' miRNA: 3'- -GCgGCCGCgAA-------------GCCGaCCA---CCGCUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 32706 | 0.68 | 0.319348 |
Target: 5'- gGCCGGCGCgg-GGCcGGUGGagcGCUc -3' miRNA: 3'- gCGGCCGCGaagCCGaCCACCgc-UGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 33213 | 0.66 | 0.423898 |
Target: 5'- aCGCCGGCcaggaugccgcgcuGCaugucuuccgggcacUCGGCgaacGGUGGCG-CCa -3' miRNA: 3'- -GCGGCCG--------------CGa--------------AGCCGa---CCACCGCuGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 33381 | 0.67 | 0.390768 |
Target: 5'- gGCCGGCcCUUCGuagGGcGGCGGCg -3' miRNA: 3'- gCGGCCGcGAAGCcgaCCaCCGCUGg -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 35393 | 0.72 | 0.182431 |
Target: 5'- gGCCGGCGgUUCGGUcuUGGcuuuguugaUGGCaGCCu -3' miRNA: 3'- gCGGCCGCgAAGCCG--ACC---------ACCGcUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 35432 | 0.66 | 0.456786 |
Target: 5'- gGCCGcagccuucgcgucuuGCGCgUUCGGCUGcUGcuGCGACUg -3' miRNA: 3'- gCGGC---------------CGCG-AAGCCGACcAC--CGCUGG- -5' |
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30857 | 3' | -61.9 | NC_006552.1 | + | 36403 | 0.74 | 0.137404 |
Target: 5'- uCGCCGGCGCUcggagacgccUUGGCUuG-GGCGGCa -3' miRNA: 3'- -GCGGCCGCGA----------AGCCGAcCaCCGCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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