miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30860 5' -56.2 NC_006552.1 + 39135 0.8 0.101886
Target:  5'- gUUCCAUgcaUUGUGCAGuCCGGUGGACGUg -3'
miRNA:   3'- -AAGGUGa--AGCACGUC-GGCCGCUUGCG- -5'
30860 5' -56.2 NC_006552.1 + 56846 0.73 0.289217
Target:  5'- cUUCCAgggaUUCG-GCAGCgccgcggcgagCGGCGAACGCa -3'
miRNA:   3'- -AAGGUg---AAGCaCGUCG-----------GCCGCUUGCG- -5'
30860 5' -56.2 NC_006552.1 + 24396 0.72 0.334106
Target:  5'- -cCCGCUUCGUccgggaagccgcuGUAGCCGgGCaGACGCa -3'
miRNA:   3'- aaGGUGAAGCA-------------CGUCGGC-CGcUUGCG- -5'
30860 5' -56.2 NC_006552.1 + 43048 0.71 0.402757
Target:  5'- cUUCACcUCGUGCAguuccaacucaccGCCGGUGAGCa- -3'
miRNA:   3'- aAGGUGaAGCACGU-------------CGGCCGCUUGcg -5'
30860 5' -56.2 NC_006552.1 + 17890 0.71 0.412872
Target:  5'- -gCUGCaUUCaagGCGGCCuGGCGAACGCu -3'
miRNA:   3'- aaGGUG-AAGca-CGUCGG-CCGCUUGCG- -5'
30860 5' -56.2 NC_006552.1 + 37658 0.7 0.441237
Target:  5'- cUCCGCUUC-UGCuGCCGGCcccuguccuuGGAUGUa -3'
miRNA:   3'- aAGGUGAAGcACGuCGGCCG----------CUUGCG- -5'
30860 5' -56.2 NC_006552.1 + 736 0.7 0.46075
Target:  5'- cUCCGCgaCGUGCAGCgcucccCGGCgcucGAugGCu -3'
miRNA:   3'- aAGGUGaaGCACGUCG------GCCG----CUugCG- -5'
30860 5' -56.2 NC_006552.1 + 58380 0.69 0.50108
Target:  5'- --aCACUg-GUGCAGaCCGGCuacgguGAGCGCg -3'
miRNA:   3'- aagGUGAagCACGUC-GGCCG------CUUGCG- -5'
30860 5' -56.2 NC_006552.1 + 44886 0.69 0.50108
Target:  5'- -aCCAUgagUUGggcaGCGGCCGGCGGAguUGCu -3'
miRNA:   3'- aaGGUGa--AGCa---CGUCGGCCGCUU--GCG- -5'
30860 5' -56.2 NC_006552.1 + 40765 0.69 0.511407
Target:  5'- gUCaGCUUCuUGCGGCUGGCGugauuCGCc -3'
miRNA:   3'- aAGgUGAAGcACGUCGGCCGCuu---GCG- -5'
30860 5' -56.2 NC_006552.1 + 44497 0.69 0.511407
Target:  5'- gUUCCGCUUCcucgaucgcaGCAGCuCGGCGGccCGCa -3'
miRNA:   3'- -AAGGUGAAGca--------CGUCG-GCCGCUu-GCG- -5'
30860 5' -56.2 NC_006552.1 + 34566 0.69 0.521822
Target:  5'- aUCCACgUCcaGCAcGUCGGCGGugGUg -3'
miRNA:   3'- aAGGUGaAGcaCGU-CGGCCGCUugCG- -5'
30860 5' -56.2 NC_006552.1 + 59391 0.68 0.542889
Target:  5'- aUCCAUggagggCGcgGCAGCgucaGGCGGugGCg -3'
miRNA:   3'- aAGGUGaa----GCa-CGUCGg---CCGCUugCG- -5'
30860 5' -56.2 NC_006552.1 + 22526 0.68 0.564228
Target:  5'- -gCCGCcUUGUGa--UCGGCGAGCGCg -3'
miRNA:   3'- aaGGUGaAGCACgucGGCCGCUUGCG- -5'
30860 5' -56.2 NC_006552.1 + 38935 0.68 0.585782
Target:  5'- -aCCuuCUUCGgagaaaUGCGGCCGGaCGccAGCGCg -3'
miRNA:   3'- aaGGu-GAAGC------ACGUCGGCC-GC--UUGCG- -5'
30860 5' -56.2 NC_006552.1 + 16335 0.68 0.585782
Target:  5'- -gCCACgggaUGCGGCCGGCuGAcCGCc -3'
miRNA:   3'- aaGGUGaagcACGUCGGCCG-CUuGCG- -5'
30860 5' -56.2 NC_006552.1 + 32687 0.68 0.585782
Target:  5'- -cCUGCUUgGUGUcgucGCCGGCcGGCGCg -3'
miRNA:   3'- aaGGUGAAgCACGu---CGGCCGcUUGCG- -5'
30860 5' -56.2 NC_006552.1 + 34808 0.67 0.59662
Target:  5'- -aCCACUUCGccuucgGaCGGCCgaGGCG-GCGCa -3'
miRNA:   3'- aaGGUGAAGCa-----C-GUCGG--CCGCuUGCG- -5'
30860 5' -56.2 NC_006552.1 + 62433 0.67 0.607488
Target:  5'- gUCCcCgaCGUGCccGCCGGCGuuccGGCGCc -3'
miRNA:   3'- aAGGuGaaGCACGu-CGGCCGC----UUGCG- -5'
30860 5' -56.2 NC_006552.1 + 9793 0.67 0.607488
Target:  5'- -aUCAUUUCGUGCAGCaacacuGCcGGCGCg -3'
miRNA:   3'- aaGGUGAAGCACGUCGgc----CGcUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.