Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30860 | 5' | -56.2 | NC_006552.1 | + | 736 | 0.7 | 0.46075 |
Target: 5'- cUCCGCgaCGUGCAGCgcucccCGGCgcucGAugGCu -3' miRNA: 3'- aAGGUGaaGCACGUCG------GCCG----CUugCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 3134 | 0.67 | 0.618377 |
Target: 5'- cUCCGCUUCGUa-AG-CGGCG-ACGCc -3' miRNA: 3'- aAGGUGAAGCAcgUCgGCCGCuUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 5245 | 0.66 | 0.677136 |
Target: 5'- -gCCACUucagcaggUCGUcGCAcgccugccgguaguuGCCGGCGAgcaagucgcgGCGCa -3' miRNA: 3'- aaGGUGA--------AGCA-CGU---------------CGGCCGCU----------UGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 7607 | 0.67 | 0.618377 |
Target: 5'- -gUCGCccaUGUGCAGaCCGGCGGcgguuugccGCGCa -3' miRNA: 3'- aaGGUGaa-GCACGUC-GGCCGCU---------UGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 9793 | 0.67 | 0.607488 |
Target: 5'- -aUCAUUUCGUGCAGCaacacuGCcGGCGCg -3' miRNA: 3'- aaGGUGAAGCACGUCGgc----CGcUUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 10139 | 0.67 | 0.618377 |
Target: 5'- gUCCACcaaGUcGCGGCCGuuGAACGUc -3' miRNA: 3'- aAGGUGaagCA-CGUCGGCcgCUUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 12706 | 0.67 | 0.628187 |
Target: 5'- cUCCAgUUCGUcGUAGCgaauacgcuguucCGGCGucagGCGCa -3' miRNA: 3'- aAGGUgAAGCA-CGUCG-------------GCCGCu---UGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 15958 | 0.67 | 0.651076 |
Target: 5'- -gCCGCUcuucuugccuccUCG-GCAGCCuGCugGAGCGCg -3' miRNA: 3'- aaGGUGA------------AGCaCGUCGGcCG--CUUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 16335 | 0.68 | 0.585782 |
Target: 5'- -gCCACgggaUGCGGCCGGCuGAcCGCc -3' miRNA: 3'- aaGGUGaagcACGUCGGCCG-CUuGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 17890 | 0.71 | 0.412872 |
Target: 5'- -gCUGCaUUCaagGCGGCCuGGCGAACGCu -3' miRNA: 3'- aaGGUG-AAGca-CGUCGG-CCGCUUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 22526 | 0.68 | 0.564228 |
Target: 5'- -gCCGCcUUGUGa--UCGGCGAGCGCg -3' miRNA: 3'- aaGGUGaAGCACgucGGCCGCUUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 24396 | 0.72 | 0.334106 |
Target: 5'- -cCCGCUUCGUccgggaagccgcuGUAGCCGgGCaGACGCa -3' miRNA: 3'- aaGGUGAAGCA-------------CGUCGGC-CGcUUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 32687 | 0.68 | 0.585782 |
Target: 5'- -cCUGCUUgGUGUcgucGCCGGCcGGCGCg -3' miRNA: 3'- aaGGUGAAgCACGu---CGGCCGcUUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 34566 | 0.69 | 0.521822 |
Target: 5'- aUCCACgUCcaGCAcGUCGGCGGugGUg -3' miRNA: 3'- aAGGUGaAGcaCGU-CGGCCGCUugCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 34808 | 0.67 | 0.59662 |
Target: 5'- -aCCACUUCGccuucgGaCGGCCgaGGCG-GCGCa -3' miRNA: 3'- aaGGUGAAGCa-----C-GUCGG--CCGCuUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 37658 | 0.7 | 0.441237 |
Target: 5'- cUCCGCUUC-UGCuGCCGGCcccuguccuuGGAUGUa -3' miRNA: 3'- aAGGUGAAGcACGuCGGCCG----------CUUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 38935 | 0.68 | 0.585782 |
Target: 5'- -aCCuuCUUCGgagaaaUGCGGCCGGaCGccAGCGCg -3' miRNA: 3'- aaGGu-GAAGC------ACGUCGGCC-GC--UUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 39135 | 0.8 | 0.101886 |
Target: 5'- gUUCCAUgcaUUGUGCAGuCCGGUGGACGUg -3' miRNA: 3'- -AAGGUGa--AGCACGUC-GGCCGCUUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 39623 | 0.67 | 0.644539 |
Target: 5'- cUUCCACUgCGgGCGggaugcccagugccuGCUGGCG-ACGCa -3' miRNA: 3'- -AAGGUGAaGCaCGU---------------CGGCCGCuUGCG- -5' |
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30860 | 5' | -56.2 | NC_006552.1 | + | 40765 | 0.69 | 0.511407 |
Target: 5'- gUCaGCUUCuUGCGGCUGGCGugauuCGCc -3' miRNA: 3'- aAGgUGAAGcACGUCGGCCGCuu---GCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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